View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_high_2 (Length: 384)
Name: NF10646_high_2
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 37153993 - 37154344
Alignment:
| Q |
16 |
cagagaaaaacaagctcaccataacatcatttatagttagttgtatgttatcatggattcatctgcaggtttagtgaccaaattgtggagctttatttct |
115 |
Q |
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| T |
37153993 |
cagagaaaaacaagctcaccataacatcatttatagttagttgtatgttatcatggattcatctgcaggtttagggaccaaattgtggagctttatttct |
37154092 |
T |
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| Q |
116 |
ttcctcccatttttcttcatgctctttatacttggtatcatcaaaggttcattttttcttttctacttatcacttttgtatttttatctcaatgttcttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37154093 |
ttcctcccatttttcttcatgctctttatacttggtatcatcaaaggttcattttttcttttctacttatcacttttgtatttttatctcaatgttcttg |
37154192 |
T |
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| Q |
216 |
ttgttagactaaaacacatttataaattttgtatgggggttcttcaaaaaataaagtatgaaagtatattaaaaactcaatgtttgaa-nnnnnnnataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37154193 |
ttgttagactaaaacacatttataaattttgtatgggggtgcttcaaaaaataaagtatgaaagtatattaaaaactcaatgtttgaattttttttataa |
37154292 |
T |
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| Q |
315 |
ggaatcatatggatgcttatataatagtacataattacataaataaaagttc |
366 |
Q |
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| T |
37154293 |
ggaatcatatggatgcttatataatagtacataattacataaataaaagttc |
37154344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 37199348 - 37199699
Alignment:
| Q |
16 |
cagagaaaaacaagctcaccataacatcatttatagttagttgtatgttatcatggattcatctgcaggtttagtgaccaaattgtggagctttatttct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37199348 |
cagagaaaaacaagctcaccataacatcatttatagttagttgtatgttatcatggattcatctgcaggtttagggaccaaattgtggagctttatttct |
37199447 |
T |
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| Q |
116 |
ttcctcccatttttcttcatgctctttatacttggtatcatcaaaggttcattttttcttttctacttatcacttttgtatttttatctcaatgttcttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199448 |
ttcctcccatttttcttcatgctctttatacttggtatcatcaaaggttcattttttcttttctacttatcacttttgtatttttatctcaatgttcttg |
37199547 |
T |
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| Q |
216 |
ttgttagactaaaacacatttataaattttgtatgggggttcttcaaaaaataaagtatgaaagtatattaaaaactcaatgtttgaa-nnnnnnnataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37199548 |
ttgttagactaaaacacatttataaattttgtatgggggtgcttcaaaaaataaagtatgaaagtatattaaaaactcaatgtttgaattttttttataa |
37199647 |
T |
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| Q |
315 |
ggaatcatatggatgcttatataatagtacataattacataaataaaagttc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37199648 |
ggaatcatatggatgcttatataatagtacataattacataaataaaagttc |
37199699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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