View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10646_high_4 (Length: 324)
Name: NF10646_high_4
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 4372090 - 4371796
Alignment:
| Q |
14 |
agattatttgggcaatgttatcatagtaagtttcaccaacttggtcttcaattttggggttacttgataattaagaatttaatatacttggctatgattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4372090 |
agattatttgggcaatgttatcatagtaagtttcaccaacttggtcttcaattttggggttacttgataattaagaatttaatatacttggctatgattt |
4371991 |
T |
|
| Q |
114 |
ttagatagcagtcagtgtaatcttatcttataaagtacattttctgccgtacattaatttgttcaaaattttattgaagactatcgtctgcctccaagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4371990 |
ttagatagcagtcagtgtaatcttatcttataaagtacattttctgccgtacattaatttgttcaaaattttattgaagactatcgtctgcctccaagat |
4371891 |
T |
|
| Q |
214 |
attaatttgagagatattcgtttgacaaaataatgnnnnnnnntacattcaatttgtcatattaaggatagttgcaagaggaatgcttgttgggga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4371890 |
attaatttgagagatattcgtttgacaaaataatg-aaaaaaatacattcaatttgtcatattaaggatagttgcaagaggaatgcttgttgggga |
4371796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 4364498 - 4364468
Alignment:
| Q |
14 |
agattatttgggcaatgttatcatagtaagt |
44 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4364498 |
agattatttgggcaatgttatcatagtaagt |
4364468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University