View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_high_6 (Length: 256)
Name: NF10646_high_6
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1900181 - 1899934
Alignment:
| Q |
1 |
aattttaaccttgtattgtatcaatgtgttattaataaatgctcttattctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctcta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900181 |
aattttaaccttgtattgtatccatgtgttattaataaatgctctttttctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctcta |
1900082 |
T |
|
| Q |
101 |
ctgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacg |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
1900081 |
ctgcttatgatagacataccagaaggggtgggcgaactgctttcatgtgaatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacg |
1899982 |
T |
|
| Q |
201 |
cacttttccaactctgtaggcacagatttttgtcttcttctctctgct |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
1899981 |
cacttttccaactctataggcacagatttttgtcttcttctctttgct |
1899934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1909627 - 1909380
Alignment:
| Q |
1 |
aattttaaccttgtattgtatcaatgtgttattaataaatgctcttattctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctcta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909627 |
aattttaaccttgtattgtatccatgtgttattaataaatgctctttttctgatatgtcttcctgtagtgcaatgaatgatttggtggacaaattctcta |
1909528 |
T |
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| Q |
101 |
ctgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttgtgctcggttctagatgtcttgctttggacagcttcgacg |
200 |
Q |
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| T |
1909527 |
ctgcttatgatagacataccagaaggggtgggcgaactgctttcatgtgaatgttgccttgtgctcgtttctagatgtcttgttttggacagcttcgacg |
1909428 |
T |
|
| Q |
201 |
cacttttccaactctgtaggcacagatttttgtcttcttctctctgct |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
1909427 |
cacttttccaactctataggcacagatttttgtcttcttctctttgct |
1909380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1893269 - 1893017
Alignment:
| Q |
1 |
aattttaaccttgtattgtatcaatgtgtt---attaataaatgctcttatt-ctgata--tgtcttcctgtagtgcaatgaatgatttggtggacaaat |
94 |
Q |
| |
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||||||||| |||||||||||| ||||||| ||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1893269 |
aattttaactttgtattgtatccatgtgttgttattaatacatgctcttttttcatatacctgtcttcctgtagtgcaatgaatgatttggtggacaaat |
1893170 |
T |
|
| Q |
95 |
tctctactgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttgtgctcggttctagatgtcttgctttggacagct |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
1893169 |
tctctactgcttatgatagacataccagaaggggtggacgaactgctttca-gtgaatgttgccttgtgctcgtttctagatgtcttgttttggacagct |
1893071 |
T |
|
| Q |
195 |
tcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctctgct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1893070 |
tcgacgcacttttccaactctgtaggcacagatttttgtcttcttctctttgct |
1893017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2935129 - 2935373
Alignment:
| Q |
1 |
aattttaaccttgtattgtatcaatgtgtt--attaataaatgctcttatt-ctgatat--gtcttcctgtagtgcaatgaatgatttggtggacaaatt |
95 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| |||||||| || || | || ||||||||||||||||||| |||||||||||||||| |
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| T |
2935129 |
aattttaactttgtattgtatccatgtgttgtattaatacatgctcttttttcttaaatctgtcttcctgtagtgcaatg----atttggtggacaaatt |
2935224 |
T |
|
| Q |
96 |
ctctactgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgttgccttg-tgctcggttctagatgtcttgctttggacagct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
2935225 |
ctctactgcttatgatagacataccagaaggggtggacgaactgctttcatgtgaatgtcgccttgttgctcgtttctagatgtcttgctttggacagct |
2935324 |
T |
|
| Q |
195 |
tcgacgcacttttccaactctgtaggcacagatttttgtcttcttctct |
243 |
Q |
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|||| |||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
2935325 |
tcgatgcacttttcccactctgtaggcacaaatttttgtcttcttctct |
2935373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 2930198 - 2930321
Alignment:
| Q |
121 |
agaaggggtggacgaactgctttcatgtgaatgttgccttgt-gctcggttctagatgtcttgctttggacagcttcgacgcacttttccaactctgtag |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2930198 |
agaaggggtggacaaactgctttcatgtgaatgttgccttgttgctcgtttctagatgtcttgctttggacagcttcgacgcacgtttccaactctgtag |
2930297 |
T |
|
| Q |
220 |
gcacagatttttgtcttcttctct |
243 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2930298 |
gcacagatttttgtcttcttctct |
2930321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1902715 - 1902579
Alignment:
| Q |
1 |
aattttaaccttgtattgtatcaatgtgtt---attaataaatgctcttatt-ctgata--tgtcttcctgtagtgcaatgaatgatttggtggacaaat |
94 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||||| |||||||| || | ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1902715 |
aattttaactttgtattgtatccatgtgttgttattaatacatgctcttttttcatatacctgtcttcctgtagtgcaatgaatgatttggtggacaaat |
1902616 |
T |
|
| Q |
95 |
tctctactgcttatgatagacataccagaaggggtgg |
131 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1902615 |
tctctactgcttatgatagacataccagaaggggtgg |
1902579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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