View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10646_low_10 (Length: 277)

Name: NF10646_low_10
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10646_low_10
NF10646_low_10
[»] chr8 (3 HSPs)
chr8 (32-272)||(10644049-10644290)
chr8 (29-277)||(17506900-17507149)
chr8 (133-272)||(32711772-32711913)
[»] chr6 (1 HSPs)
chr6 (39-277)||(21506017-21506256)
[»] chr1 (6 HSPs)
chr1 (39-277)||(21529754-21529992)
chr1 (31-277)||(22908001-22908248)
chr1 (133-255)||(44307107-44307229)
chr1 (133-255)||(46883502-46883627)
chr1 (46-114)||(46883416-46883483)
chr1 (31-114)||(44307249-44307332)
[»] scaffold0697 (1 HSPs)
scaffold0697 (39-277)||(711-948)
[»] chr3 (4 HSPs)
chr3 (133-277)||(27426780-27426925)
chr3 (136-270)||(34785563-34785698)
chr3 (189-269)||(15761388-15761469)
chr3 (31-114)||(34785459-34785541)
[»] chr4 (1 HSPs)
chr4 (133-255)||(13892717-13892839)
[»] chr2 (2 HSPs)
chr2 (133-245)||(6051808-6051919)
chr2 (33-250)||(26666934-26667150)
[»] chr7 (2 HSPs)
chr7 (133-274)||(13323916-13324058)
chr7 (40-113)||(13323823-13323896)
[»] chr5 (5 HSPs)
chr5 (191-268)||(33319703-33319781)
chr5 (133-277)||(5665789-5665934)
chr5 (40-94)||(21635668-21635722)
chr5 (40-94)||(21643915-21643969)
chr5 (26-114)||(5665682-5665770)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 272
Target Start/End: Complemental strand, 10644290 - 10644049
Alignment:
Q  32 aaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnnn 131  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||                     
T  10644290 aagggggcgtttgtttgagggttacaaaatctattcccaggtatcaacttttccaggaatatgaaggttaaaattttattcccaggaaaatatagaaaaa 10644191  T
Q  132 ngtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataa 231  Q
     |||||||||||||||||||||| ||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10644190 agtgtttggttaattgtttaatttctgggaactttttttaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaatga 10644091  T
Q  232 acattataattacacaaatg-ccccgttgtataaaccataaa 272  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  10644090 acattataattacacaaatgcccccgttgtataaaccataaa 10644049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 17506900 - 17507149
Alignment:
Q  29 actaaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnn 128  Q
    |||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||                  
T  17506900 actacgggggcgtttgtttgagggttacaaaatctattcccaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaa 17506999  T
Q  129 nnnngtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaa 228  Q
        |||||||||||||||||||||||||| ||||       |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  17507000 aaaagtgtttggttaattgtttaattcctgggaactttttttaaaataattccacggaacaagtaaaataggtttggtttccgatgtagaatcctgggaa 17507099  T
Q  229 taaacattataattacacaaatg-ccccgttgtataaaccataaatctaa 277  Q
    | |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  17507100 tgaacattataattacgcaaatgcccccgttgtataaaccataaatctaa 17507149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 32711772 - 32711913
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    |||||||||||||||||||||||||| ||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  32711772 gtgtttggttaattgtttaattcctgggaactttttttaaaataattccagggaacgagtaaaataggtttggtttgcgatgtagaatcctgggaatgaa 32711871  T
Q  233 cattataattacacaaatgcccc--gttgtataaaccataaa 272  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  32711872 cattataattacacaaatgcccctgtttgtataaaccataaa 32711913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 39 - 277
Target Start/End: Complemental strand, 21506256 - 21506017
Alignment:
Q  39 cgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnnnngtgttt 138  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||                   ||||||    
T  21506256 cgtttgtttgagggttacaaaatcgattcccaggtatcaacttttccaggaatgtgaaggttaaaattttattcctaggaaaatatagaaaaaagtgttt 21506157  T
Q  139 ggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaacattat 238  Q
    ||||||||||| |||||||| ||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  21506156 ggttaattgttgaattcctgggaactttttttaaaataattccagggaacaagtaaaatacgtttggtttgcgatgtagaatcctgggaatgaacattat 21506057  T
Q  239 aattacacaaatgcccc-gttgtataaaccataaatctaa 277  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  21506056 aattacacaaatgccccagttgtataaaccataaatctaa 21506017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 21529754 - 21529992
Alignment:
Q  39 cgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnnnngtgttt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                  ||||||    
T  21529754 cgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaaagtgttt 21529853  T
Q  139 ggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaacattat 238  Q
    ||||||||||| ||||| || ||||       ||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  21529854 ggttaattgttgaattcgtgggaactttttttaaaataattacagggaacaagtaaaatacatttggtttgcaatgtagaatcctgggaatgaacattat 21529953  T
Q  239 aattacacaaatgccccgttgtataaaccataaatctaa 277  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21529954 aattacacaaatgccccgttgtataaaccataaatctaa 21529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 277
Target Start/End: Complemental strand, 22908248 - 22908001
Alignment:
Q  31 taaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnn 130  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||                    
T  22908248 taagggggcgtttgtttgagggttacaaaatttattcccaggtatcaactttcctaggaatgtgaaggttaaaattttattcccaggaaaatatagaaaa 22908149  T
Q  131 nngtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaata 230  Q
      ||||||| |||||||||||||||||| ||||       ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||     
T  22908148 aagtgtttgattaattgtttaattcctgggaactttttttaaaataattccagggaacaagtaaagtaggtttggtttgcaatgtaaaatcctgggaatg 22908049  T
Q  231 aacattataattacacaaatg-ccccgttgtataaaccataaatctaa 277  Q
    | ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  22908048 accattataattacaaaaatgcccccgttgtataaaccataaatctaa 22908001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 44307229 - 44307107
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    |||||||||||||||||||||||||| ||||       |||||||||||| |||| |||| ||||| | |||||||| ||||||||||| || |||| ||    
T  44307229 gtgtttggttaattgtttaattcctgggaactttttttaaaataattccaaggaataagtgaaatatggttggtttgagatgtagaatcatgagaatgaa 44307130  T
Q  233 cattataattacacaaatgcccc 255  Q
    ||||||||||||| |||| ||||    
T  44307129 cattataattacataaatacccc 44307107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 46883502 - 46883627
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaa---tcctgggaat 229  Q
    ||||||||||| |||||||||||||| ||||       |||||||||||| |||| |||| ||||| |||||||||| || ||||||   ||||||||||    
T  46883502 gtgtttggttagttgtttaattcctgcgaactttttttaaaataattccaaggaataagtgaaatatgtttggtttgagaggtagaagaatcctgggaat 46883601  T
Q  230 aaacattataattacacaaatgcccc 255  Q
     ||||||||||||||| |||| ||||    
T  46883602 gaacattataattacataaatacccc 46883627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 46883416 - 46883483
Alignment:
Q  46 ttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattccc 114  Q
    |||||||||||||||  ||||| ||||||| |||||||||| |||| ||||||| |||||| |||||||    
T  46883416 ttgagggttacaaaacttattcccaggtattaacttttcca-gaatatgaaggtgaaaattgtattccc 46883483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 44307332 - 44307249
Alignment:
Q  31 taaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattccc 114  Q
    |||||||  ||||||||||||||| |||||  ||||| || | || |||||| |||||||||||||||| ||| || |||||||    
T  44307332 taagggggtgtttgtttgagggtttcaaaacttattcccatgaattaactttcccaggaatgtgaaggtgaaacttgtattccc 44307249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 711 - 948
Alignment:
Q  39 cgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnnnngtgttt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                  ||||||    
T  711 cgtttgtttgagggttacaaaatctattctcaggtatcaactttcccaggaatgtgaaggttaaaattttattcccagaaaaatatagaaaaa-gtgttt 809  T
Q  139 ggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaacattat 238  Q
    ||||||||||| ||||| || ||||       ||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||    
T  810 ggttaattgttgaattcgtgggaactttttttaaaataattacagggaacaagtaaaatacatttggtttgcaatgtagaatcctgggaatgaacattat 909  T
Q  239 aattacacaaatgccccgttgtataaaccataaatctaa 277  Q
    |||||||||||||||||||||||||||||||||||||||    
T  910 aattacacaaatgccccgttgtataaaccataaatctaa 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 27426925 - 27426780
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    |||||||||||||||||||||||||| ||||       ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||    
T  27426925 gtgtttggttaattgtttaattcctgggaacttttttgaaaataattccagggaacaggtaaaatacgtttggtttgtgatgtagaatcctgggaatgaa 27426826  T
Q  233 cattataattacacaaatg-ccccgttgtataaaccataaatctaa 277  Q
    || | ||||||||||| || |||| |||||||||||||||| ||||    
T  27426825 cactgtaattacacaagtgcccccattgtataaaccataaaactaa 27426780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 270
Target Start/End: Original strand, 34785563 - 34785698
Alignment:
Q  136 tttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaacat 235  Q
    |||||||||||||||||||||||  |||       ||||||||||||||  |||||||||||| |||||||||||||||||||| ||| | |||  | ||    
T  34785563 tttggttaattgtttaattcctggtaacttttttaaaaataattccaggttacaagtaaaatatgtttggtttgcgatgtagaaacctagtaatcgatat 34785662  T
Q  236 tataattacacaaatg-ccccgttgtataaaccata 270  Q
    |||||||||||||||| |||| ||||||||||||||    
T  34785663 tataattacacaaatgcccccattgtataaaccata 34785698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 15761388 - 15761469
Alignment:
Q  189 aagtaaaataggtttggtttgcgatgtagaatcctgggaataaacattataattacacaaatgcccc-gttgtataaaccat 269  Q
    |||||||||| |||| ||||| |||||||||||||  ||||||||||| |||||||| |||||||||  |||||||||||||    
T  15761388 aagtaaaatatgtttagtttgagatgtagaatcctaagaataaacattgtaattacataaatgcccctattgtataaaccat 15761469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 34785459 - 34785541
Alignment:
Q  31 taaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattccc 114  Q
    ||||||||||||||||||||||||||| ||| |||||  |||| | |||||  |||||||| | |||||| ||||||| |||||    
T  34785459 taaggggacgtttgtttgagggttacataatttattcctaggttttaacttccccaggaatttaaaggtt-aaatttttttccc 34785541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 13892717 - 13892839
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    ||||||||||||||||||||||||||  |||       |||||||||||| |||| |||| ||||| | |||||||| ||||||||||||| ||||| ||    
T  13892717 gtgtttggttaattgtttaattcctggaaactttttttaaaataattccaaggaataagtgaaatatggttggtttgagatgtagaatcctaggaatgaa 13892816  T
Q  233 cattataattacacaaatgcccc 255  Q
    ||||||||||||| |||| ||||    
T  13892817 cattataattacataaatacccc 13892839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 6051919 - 6051808
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    |||||||||||||||||||||||| | ||||       |||||||||||| |||| |||| ||||| | |||||||| ||||||||||||||||||| ||    
T  6051919 gtgtttggttaattgtttaattccagggaactttttt-aaaataattccaaggaataagtgaaatatggttggtttgagatgtagaatcctgggaatgaa 6051821  T
Q  233 cattataattaca 245  Q
    |||||||||||||    
T  6051820 cattataattaca 6051808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 26667150 - 26666934
Alignment:
Q  33 aggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcccnnnnnnnnnnnnnnnnnn 132  Q
    ||||| ||||||||||||||||||||||| |||||  ||||||  | ||| |||||||||||||||| ||||||||||||||                      
T  26667150 agggggcgtttgtttgagggttacaaaatttattcctaggtattcattttcccaggaatgtgaaggtgaaaattttattcccaggaaaatatagaaaaag 26667051  T
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaatcctgggaataaa 232  Q
    ||||||||||||||||||||||||| || |        |||||||||||| |||| |  ||||||| |||||| ||| ||||||||||||||||||||||    
T  26667050 gtgtttggttaattgtttaattcct-aggaattgttttaaaataattccaaggaatagataaaatatgtttggcttgagatgtagaatcctgggaataaa 26666952  T
Q  233 cattataattacacaaat 250  Q
      ||||||| ||| ||||    
T  26666951 tgttataatcacataaat 26666934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 274
Target Start/End: Original strand, 13323916 - 13324058
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaat-cctgggaataa 231  Q
    |||||||||||||||||||||||||| ||||       |||||||||||| |||| |   |||||| |||||| | || | ||||||  ||| |||||||    
T  13323916 gtgtttggttaattgtttaattcctgggaacttcttttaaaataattccaaggaatagaaaaaatatgtttggct-gcaaggtagaaaacctaggaataa 13324014  T
Q  232 acattataattacacaaatgccc-cgttgtataaaccataaatc 274  Q
    |||||||||||||||||||||||   || |||||||||||||||    
T  13324015 acattataattacacaaatgcccttattatataaaccataaatc 13324058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 13323823 - 13323896
Alignment:
Q  40 gtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattcc 113  Q
    |||||||||||||||||||||| ||||| |||| || |||||  |||||||||| ||||  ||| |||||||||    
T  13323823 gtttgtttgagggttacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattcc 13323896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 33319703 - 33319781
Alignment:
Q  191 gtaaaataggtttggtttgcgatgtagaatcctgggaataaacattataattacacaaatgcccc-gttgtataaacca 268  Q
    |||||||| |||||| |||| ||||||||||||| |||| |||||||||| ||||||||| ||||  ||||||||||||    
T  33319703 gtaaaatatgtttggcttgcaatgtagaatcctgcgaatgaacattataagtacacaaatacccctattgtataaacca 33319781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 5665789 - 5665934
Alignment:
Q  133 gtgtttggttaattgtttaattcctgagaacnnnnnnnaaaataattccagggaacaagtaaaataggtttggtttgcgatgtagaat-cctgggaataa 231  Q
    |||||||||||||||| ||||||||| ||||       |||||||||||| |||| |   |||||| |||||| | || | ||||||  ||| |||||||    
T  5665789 gtgtttggttaattgtgtaattcctgggaacttcttttaaaataattccaaggaatagaaaaaatatgtttggct-gcaaggtagaaaaccttggaataa 5665887  T
Q  232 acattataattacacaaatgccc-cgttgtataaaccataaatctaa 277  Q
    |||||||||||||||||||||||   || ||||||||||||||||||    
T  5665888 acattataattacacaaatgcccttattatataaaccataaatctaa 5665934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 21635668 - 21635722
Alignment:
Q  40 gtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtg 94  Q
    |||||||||||||||||||||| ||||||  ||||||||||||  ||||||||||    
T  21635668 gtttgtttgagggttacaaaatttattcttcggtatcaactttctcaggaatgtg 21635722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 21643915 - 21643969
Alignment:
Q  40 gtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtg 94  Q
    |||||||||||||||||||||| ||||||  ||||||||||||  ||||||||||    
T  21643915 gtttgtttgagggttacaaaatttattcttcggtatcaactttctcaggaatgtg 21643969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 5665682 - 5665770
Alignment:
Q  26 aacactaaggggacgtttgtttgagggttacaaaatctattctcaggtatcaacttttccaggaatgtgaaggttaaaattttattccc 114  Q
    |||| |||||||  |||| ||||||||||||||||| ||||| |||| || |||||  |||||||||| ||||  ||| ||||||||||    
T  5665682 aacaataagggggtgtttttttgagggttacaaaatttattcccaggaattaacttacccaggaatgtaaaggggaaatttttattccc 5665770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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