View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10646_low_11 (Length: 275)
Name: NF10646_low_11
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 29155904 - 29155650
Alignment:
| Q |
5 |
gagagatgacattgatgtaataggcatagaatttgagagattgatattagatgaattagtggcagaaatagtcggtatctagaaattttgtacccccgag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29155904 |
gagagatgacattgatgtaataggcatagaatttgagagattgatattagatgaattagtggcagaaatagtcggtatctagaaattttgtacccccgag |
29155805 |
T |
|
| Q |
105 |
agaatagttgtccttaggatgtttcctagtaatgtaaatcaagtagggcaatgttaatttcatctaaagatgaataaatggatgataatattttcatttg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29155804 |
agaatagttgtccttaggatgtttcctagtaatgtaaatcaagtagggcaatgttaatttcatctaaagatgaataaatggatgataatattttcatttg |
29155705 |
T |
|
| Q |
205 |
gacaaatagattatgaggatgtgaataagtttagtgggaattgaagagagctaac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29155704 |
gacaaatagattatgaggatgtgaataagtttagtgggaattgaagagagctaac |
29155650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 18555587 - 18555762
Alignment:
| Q |
9 |
gatgacattgatgtaataggcatagaatttgagagattgatattagatgaattagtggcagaaatagtcggtatctagaaattttgtacccccgagagaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||||||| || ||||||||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
18555587 |
gatgacattgatgtaataggcatagaagttgagagaatgatactagatgattttgtggcagaaatagccggtatctagaaattt-gtacccc-gagagaa |
18555684 |
T |
|
| Q |
109 |
tagttgtccttaggatgtttcctagtaatgtaaatcaagtagggcaatgttaatttcatctaaagatgaataaatgga |
186 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18555685 |
tagttgtccttaggatgtttcctagtgatgtaaatacagtatggaaatgttaatttcatctaaagatgaatagatgga |
18555762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University