View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_low_12 (Length: 270)
Name: NF10646_low_12
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 50724310 - 50724052
Alignment:
| Q |
18 |
ctatgatccttgttattcaacatatgcagaagaatttttcaacaggatagatgttcaatcatcttttcatgcaaatactataagagaaaacaataacata |
117 |
Q |
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| T |
50724310 |
ctatgatccttgttattcaacatatgcagaagaatttttcaacaggatagatgttcaatcatcttttcatgcaaataatataagagaaaacaataacata |
50724211 |
T |
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| Q |
118 |
gcatggaaggtttgcaagtaagcactacaatttgatatata----tatagatcccttaattaa------------ttgtatagaatattgaatactaatt |
201 |
Q |
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| T |
50724210 |
gcatggaaggtttgcaagtaagcactacaatttgatatatatatatatagatcccttaattaattgatattttttttgtatagaatattgaatactaatt |
50724111 |
T |
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| Q |
202 |
tccatctatatatgtctcatttgtcagtaattccatattgaggacttacaacttctctg |
260 |
Q |
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| T |
50724110 |
tccatctatatatgtctcatttgtcagtaattccatattgaggacttacaacttctctg |
50724052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 50731681 - 50731546
Alignment:
| Q |
18 |
ctatgatccttgttattcaacatatgcagaagaatttttcaacaggatagatgttcaatcatcttttcatgcaaatactataagagaaaacaataacata |
117 |
Q |
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|||||| ||||||||||| | |||||||||||||||||| || ||| |||||||||| | |||| |||||||||| | || ||||| ||||| ||| ||| |
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| T |
50731681 |
ctatgacccttgttattccatatatgcagaagaattttttaatagggtagatgttcagttatctattcatgcaaacaataaaagaggaaacagtaaaata |
50731582 |
T |
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| Q |
118 |
gcatggaaggtttgcaagtaagcactacaatttgat |
153 |
Q |
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| T |
50731581 |
gaatggaagggttgcaagtaagcactacaatttgat |
50731546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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