View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_low_13 (Length: 265)
Name: NF10646_low_13
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_13 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 47649172 - 47649340
Alignment:
| Q |
3 |
aatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatga |
102 |
Q |
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| T |
47649172 |
aatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttctctgaagtggtgttattatccttgtga |
47649271 |
T |
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| Q |
103 |
acaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaat |
171 |
Q |
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| T |
47649272 |
gcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaat |
47649340 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 47649437 - 47649529
Alignment:
| Q |
170 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctt |
253 |
Q |
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| T |
47649437 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgcctt |
47649529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 91407 - 91528
Alignment:
| Q |
48 |
aaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
147 |
Q |
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| T |
91407 |
aaagtcaagaaaaattgcttacaatttctgg--agtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
91504 |
T |
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| Q |
148 |
ataccctataaaaatattcaaaat |
171 |
Q |
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| T |
91505 |
ataccctataaaaatattcaaaat |
91528 |
T |
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Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 91601 - 91695
Alignment:
| Q |
170 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttg |
255 |
Q |
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| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttg |
91695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 30753283 - 30753404
Alignment:
| Q |
6 |
ccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaaca |
105 |
Q |
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| T |
30753283 |
ccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttattatccttatgaaca |
30753382 |
T |
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| Q |
106 |
agttcatacattatattaagtg |
127 |
Q |
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| T |
30753383 |
agttcagacattatcttaagtg |
30753404 |
T |
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