View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10646_low_16 (Length: 239)
Name: NF10646_low_16
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 1606332 - 1606192
Alignment:
| Q |
1 |
atgctccataaattaacaaccaaaaagctttcataccaaatttcgaatcgcannnnnnnnn-ggtaggggtcatcaaataagttacgtacgcatatacta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1606332 |
atgctccataaattaacaaccaaaaagctttcataccaaatttcgaatcgcattttttttttggtagaggtcatcaaataagttacgtacgcatatacta |
1606233 |
T |
|
| Q |
100 |
ctaattaaacattcttagcttgttaaaaagaaatcattatt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606232 |
ctaattaaacattcttagcttgttaaaaagaaatcattatt |
1606192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 1606169 - 1606069
Alignment:
| Q |
124 |
aaaaagaaatcattatttactaaaaaataacattcctagaaaacatgtacggtacccataaaactataatcatttgcaattagataattaattataaaac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606169 |
aaaaagaaatcattatttactaaaaaataacattcctagaaaacatgtacggtacccataaaactataatcatttgcaattagataattaattataaaac |
1606070 |
T |
|
| Q |
224 |
t |
224 |
Q |
| |
|
| |
|
|
| T |
1606069 |
t |
1606069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University