View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_low_18 (Length: 229)
Name: NF10646_low_18
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 35044175 - 35043972
Alignment:
| Q |
11 |
gagaagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
110 |
Q |
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| T |
35044175 |
gagaagcaaaggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
35044076 |
T |
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| Q |
111 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggct |
210 |
Q |
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| T |
35044075 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggct |
35043976 |
T |
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| Q |
211 |
tctg |
214 |
Q |
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|||| |
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| T |
35043975 |
tctg |
35043972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 35029887 - 35029703
Alignment:
| Q |
31 |
tttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaag-ataggtccgtatttatcggct |
129 |
Q |
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| T |
35029887 |
tttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtccgtatttgtcggct |
35029788 |
T |
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| Q |
130 |
agcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctg |
214 |
Q |
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| T |
35029787 |
aagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctg |
35029703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 35019798 - 35019629
Alignment:
| Q |
28 |
tcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcgg |
127 |
Q |
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||||||||||| || || |||||| |||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||| ||||||||||| |||| |
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| T |
35019798 |
tcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgtatttgtcgg |
35019699 |
T |
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| Q |
128 |
ctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggcca |
197 |
Q |
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| T |
35019698 |
ctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggcca |
35019629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 35036014 - 35035825
Alignment:
| Q |
11 |
gagaagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
110 |
Q |
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|||||||||||||| | |||||||| ||||| || ||| | || ||||| |||||||| | ||||| ||| |||||||| ||||| | |||||||| |
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| T |
35036014 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagat |
35035915 |
T |
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| Q |
111 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagc |
200 |
Q |
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| T |
35035914 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagc |
35035825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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