View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10646_low_2 (Length: 434)
Name: NF10646_low_2
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 44924117 - 44924525
Alignment:
| Q |
16 |
caagaacaactgtcttctccctgattaacccccgtcttatatttcatatgatgattgaaattacagggaaaaagtcaaaattttgttgacaagtgccgga |
115 |
Q |
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| T |
44924117 |
caagaacaactgtcttctccctgattaacccccgtcttatatttcatataatgattgaaattacagggaaaaagtcaaaattttgttgacaagtgccgga |
44924216 |
T |
|
| Q |
116 |
tatgttcatttgacacaacatcggttatctaagcacacaaagaacctttcgccagtaagccgggctattttgctttctggacctgcaggtatattgttat |
215 |
Q |
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| T |
44924217 |
tatgttcatttgacacaacatcggttatctaagcacacaaagaacctttcgccagtaagccgggctattttgctttctggacctgcaggtatattgttat |
44924316 |
T |
|
| Q |
216 |
gtacaagttttgtcttgtcatgcaaacattattttggttttcaaatcatacaactaatactagtgatatttcagtttttgaagaattttatcaggaaaag |
315 |
Q |
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| T |
44924317 |
gtacaagttttgtcttgtcatgcaaacattattttggttttcaaatcatacaactaatactagtgatatttcagtttttgaagaattttatcaggaaaat |
44924416 |
T |
|
| Q |
316 |
cttgccaaagctttagcacattactttgaatcaaagctactgattctagatatttataacttcgcttggaaggtagctttttaacatcttttttacttta |
415 |
Q |
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| T |
44924417 |
cttgccaaagctttagcacattactttgaatcaaagctactgattctagatatttataacttcacttggaaggtagctttttaacatcttttttacttta |
44924516 |
T |
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| Q |
416 |
ctttctctg |
424 |
Q |
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||||||||| |
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| T |
44924517 |
ctttctctg |
44924525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 44 - 369
Target Start/End: Original strand, 44932347 - 44932670
Alignment:
| Q |
44 |
cccccgtcttatatttca-tatgatgattgaaattacagggaaaaagtcaaaattttgttgacaagtgccggatatgttcatttgacacaacatcggtta |
142 |
Q |
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| T |
44932347 |
cccccatcttatgtttcaatatgatgattgaaatgacagtgaaaaaaacaaaattttgttgacaagtgctggatattttcatttaagacaacatgactta |
44932446 |
T |
|
| Q |
143 |
tctaagcacacaaagaacctttcgccagtaagccgggctattttgctttctggacctgcaggtatattgttatgtacaagttttgtcttgtcatgcaaac |
242 |
Q |
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| T |
44932447 |
tccaagcacaccaggaacctttcgccagtaagacgggctattttgctttctggacatgcaggtata---tttcgtccaaatcttgtcttctcatgcgaaa |
44932543 |
T |
|
| Q |
243 |
attattttggttttcaaatcatacaactaatactagtgatatttcagtttttgaagaattttatcaggaaaagcttgccaaagctttagcacattacttt |
342 |
Q |
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| T |
44932544 |
attattttggttttcaaatcatataactagctttaatgatattttaatttttgaagaacattatcatcataagcttgccggagctttagcacattgcttt |
44932643 |
T |
|
| Q |
343 |
gaatcaaagctactgattctagatatt |
369 |
Q |
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| T |
44932644 |
gaatcgaagttgctgtctctagatatt |
44932670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 32198462 - 32198587
Alignment:
| Q |
131 |
caacatcggttatctaagcacacaaagaacctttcgccagtaagccgggctattttgctttctggacctgcaggtatattgttatgtacaagttttgtct |
230 |
Q |
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||||||| ||||||||| ||| || |||||||||||| |||| | ||||||||||||| ||||| ||| ||||||||||||| ||||||||||||| |
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| T |
32198462 |
caacatcacttatctaagtacatgaacaacctttcgccactaagacaagctattttgctttagggaccagcatgtatattgttatgcacaagttttgtct |
32198561 |
T |
|
| Q |
231 |
tgtcatgcaaacattattttggtttt |
256 |
Q |
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||||| |||| | |||||||||||| |
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| T |
32198562 |
agtcatacaaaaactattttggtttt |
32198587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 32196106 - 32196178
Alignment:
| Q |
158 |
aacctttcgccagtaagccgggctattttgctttctggacctgcaggtatattgttatgtacaagttttgtct |
230 |
Q |
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| T |
32196106 |
aacctttcgccactaagccaagctattttgctttagggaccaacatgtatattgttatgcacaagttttgtct |
32196178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 11096909 - 11096858
Alignment:
| Q |
290 |
tttttgaagaattttatcaggaaaagcttgccaaagctttagcacattactt |
341 |
Q |
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| T |
11096909 |
tttttgaagaactttatcagcaaatgcttgccaaagctttagcacattactt |
11096858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 11097111 - 11096997
Alignment:
| Q |
96 |
ttttgttgacaagtgccggatatgttcatttgacacaacatcggttatctaagcacacaaagaacctttcgccagtaagccgggctattttgctttctgg |
195 |
Q |
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||||| |||||||||| | |||||||||||| | ||| | | || || |||||||||| |||||| || || | |||| |||||||||| |||||||| |
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| T |
11097111 |
ttttgctgacaagtgcggcatatgttcatttaaaacatcttaacttttccaagcacacaaggaacctctcaccggcaagcagggctattttactttctgg |
11097012 |
T |
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| Q |
196 |
acctgcaggtatatt |
210 |
Q |
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|||||||||||||| |
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| T |
11097011 |
tcctgcaggtatatt |
11096997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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