View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10646_low_3 (Length: 414)
Name: NF10646_low_3
Description: NF10646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10646_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 36425192 - 36425575
Alignment:
| Q |
18 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36425192 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
36425291 |
T |
|
| Q |
118 |
attaacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36425292 |
attaacacattcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
36425391 |
T |
|
| Q |
218 |
gaaagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccg |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36425392 |
gaaagcttggatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccg |
36425491 |
T |
|
| Q |
318 |
acgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgatgttc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36425492 |
acgatgaccctggaaaaggtgcgttcaccgtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgatgttc |
36425575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 36411026 - 36411405
Alignment:
| Q |
18 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36411026 |
ccatcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttc |
36411125 |
T |
|
| Q |
118 |
attaacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36411126 |
attaacacagtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
36411225 |
T |
|
| Q |
218 |
gaaagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccg |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
36411226 |
gaaagctttgatcatcccacagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacag |
36411325 |
T |
|
| Q |
318 |
acgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgat |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||| |
|
|
| T |
36411326 |
atgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgat |
36411405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 36416357 - 36416736
Alignment:
| Q |
18 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36416357 |
ccatcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattcccatttggtctaccaatgtttc |
36416456 |
T |
|
| Q |
118 |
attaacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36416457 |
attaacacagtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgg |
36416556 |
T |
|
| Q |
218 |
gaaagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccg |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
36416557 |
gaaagctttgatcatcccacagacacaatgcttccgtatcaaaagattggttttgatagaaaaattaatcaaagttgggtccttcaatcctggaagacag |
36416656 |
T |
|
| Q |
318 |
acgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgat |
397 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |||| |
|
|
| T |
36416657 |
atgatgaccctggaaaaggtgcgttcacggtgaaattcagcaccattggcaaaccacaattgtttatgtacaaccatgat |
36416736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 36403709 - 36404086
Alignment:
| Q |
18 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
117 |
Q |
| |
|
||||||||||||||||||| ||| |||| || ||||||||||| ||||||| | | |||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
36403709 |
ccatcaatgacacttctgggattttatccattgacccaaatggaaatctagtaattcaccacaaccatagcaccattcccatttggtctaccgatgtttc |
36403808 |
T |
|
| Q |
118 |
attaacacggtcacaaagaaataacaccaatg---ttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatc |
214 |
Q |
| |
|
||| ||| ||||||||||||| |||||||| ||||||| || ||| || |||| |||||||||||||| | ||||| |||| |||||| |||| |
|
|
| T |
36403809 |
atttccacaatcacaaagaaatagcaccaatgctgttatagcgaaattatcagacatagcaaaccttgttctgatgataaacaacacaaaaactgtcatc |
36403908 |
T |
|
| Q |
215 |
tgggaaagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaaga |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| ||||| | || ||| ||||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
36403909 |
tgggaaagctttgatcatcccacagacaccttgcttccatatctaaagatagggtttaatagaaaaactaatcaaagctggttccttcaatcctggaaga |
36404008 |
T |
|
| Q |
315 |
ccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaacc |
392 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
36404009 |
cagatgatgaccctggaaaaggtgcgttcacggtggaattcagcaccattggtaaacctcagttgtttatgtacaacc |
36404086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 36373039 - 36373416
Alignment:
| Q |
20 |
atcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttcat |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||| ||||||| |||| ||||||| | ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36373039 |
atcaacgatacttctggaattctatcaatcgatccaaatgaaaatctagtactcaaccacaaccgtagcaccattcccatttggtctaccgatgtttcat |
36373138 |
T |
|
| Q |
120 |
taacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctggga |
219 |
Q |
| |
|
|| ||| ||||||||||||| ||||| |||||||||||| ||| |||| ||| |||||||||||||| | ||||| ||||| |||||| | ||||| |
|
|
| T |
36373139 |
taccacaatcacaaagaaatagcaccagggttatagctcaattatcggatgtagcaaaccttgttctgatgataaacaacaccaaaactgtattatggga |
36373238 |
T |
|
| Q |
220 |
aagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccgac |
319 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||| ||||| |||| ||| ||||||||| ||||||||| |||||||||||||| |||||||| || |
|
|
| T |
36373239 |
aagctttgatcatccaacagacaccttgcttccatatctaaagattgggtttaatagaaaaactaatcaaagctggttccttcaatcctggaagacagat |
36373338 |
T |
|
| Q |
320 |
gatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgat |
397 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||| || |||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
36373339 |
gatgaccctggaaatggtgcattcacagtgaaattcaacagcattgtcaaacctcagttgtttatgtacaaccatgat |
36373416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 36396776 - 36397153
Alignment:
| Q |
18 |
ccatcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||| |
|
|
| T |
36396776 |
ccatcaatgacacttctggaattctatcaatcaaccaaaatgggaatctagaactccaccacaaccttagcaccattccaatttggtccactaatgtttc |
36396875 |
T |
|
| Q |
118 |
attaacacggtcacaaagaaataacaccaatg---ttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatc |
214 |
Q |
| |
|
|||||||| ||||||||||||| ||| | || ||||||| || || || | || |||| ||||||||| | ||||| |||| |||||| ||| |
|
|
| T |
36396876 |
attaacactatcacaaagaaatatcactagtgctgttatagcaaaattaacagacaaagcaaacattgttctgatgataaacaacacaaaaactgtcatt |
36396975 |
T |
|
| Q |
215 |
tgggaaagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaaga |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||| | ||||||||| || | |||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
36396976 |
tgggaaagctttgatcatcccacagacaccttccttccatatcaaaggtttggttttgatagaaaaactaatcaaagttggccccttcaatcctggaaga |
36397075 |
T |
|
| Q |
315 |
ccgacgatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaacc |
392 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||||||||||| || || | ||| ||||||||||||||||||| |
|
|
| T |
36397076 |
cagaagatgaccctggaaaaggtgcattcacggtgaaattcagcagcataggtatacctcagttgtttatgtacaacc |
36397153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 36368423 - 36368800
Alignment:
| Q |
20 |
atcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| ||||||| ||| ||||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
36368423 |
atcaatgacacttctggaattctatcaatcgatcgaaatggaaatctagttctcaaccacaaccttagcaacattcccatttggtctaccgctgtttcac |
36368522 |
T |
|
| Q |
120 |
taacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctggga |
219 |
Q |
| |
|
|| | |||||| | ||||| |||||| |||||||||||||||| ||||||||||||||||||| ||| | |||| | || |||||| ||| ||||| |
|
|
| T |
36368523 |
tactgcagtcacagataaatagcaccaacgttatagctcaactatcggatataggaaaccttgttttgatgctaaaaagctccaaaactgtcatatggga |
36368622 |
T |
|
| Q |
220 |
aagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccgac |
319 |
Q |
| |
|
||| ||| ||||||| ||||| || ||||||||||| | ||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||| || |
|
|
| T |
36368623 |
aagttttgatcatcctacagataccttgcttccatatctcaaggttggttttgatagaaaaactaatcaaagctggtttctccaatcatggaagacagat |
36368722 |
T |
|
| Q |
320 |
gatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgat |
397 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
36368723 |
gatgaccctggaaaaggcgcattcacattgaaattcagcagcattggaaaacctcagttgtttatgtacaaccatgat |
36368800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 29 - 397
Target Start/End: Original strand, 36387004 - 36387375
Alignment:
| Q |
29 |
acttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttcattaacacggt |
128 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| | | | |
|
|
| T |
36387004 |
acttccggaattttatca-tcgacccaaatggaaatctagtactccaccacaacctaagcaccattcccatttggtctaccaatgtttcattcccgcaat |
36387102 |
T |
|
| Q |
129 |
cacaaagaaataacacca---atgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctgggaaagctt |
225 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||| | ||||| ||||| |||||| | ||||||||||| |
|
|
| T |
36387103 |
cacaaagaaatagcactagtgctgttatagctcaactatcggatatagcaaaccttgttttgatgataaacaacaccaaaactgtattatgggaaagctt |
36387202 |
T |
|
| Q |
226 |
tcatcatcccacagacacaatgcttccatatataaagcttggttttgat-agaaaaattaatcaaagttggttccttcaatcatggaagaccgacgatga |
324 |
Q |
| |
|
| ||||||| |||||||| ||||||||||| ||| ||||||||||||| | ||||| ||||||||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
36387203 |
tgatcatccaacagacaccttgcttccatatctaaggcttggttttgataaaaaaaactaatcaaagctggttccttcaatcctggaagacggatgatga |
36387302 |
T |
|
| Q |
325 |
ccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaaccgtgat |
397 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||| ||||||||||| || |||| |||||||||| |||| |
|
|
| T |
36387303 |
ccctggaaatggtgcattcacagtgaaattcagcaccattggcaaacctcaagtgttaatgtacaaccatgat |
36387375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 36433051 - 36433421
Alignment:
| Q |
20 |
atcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaactccaccacaaacttagcaccattcccatttggtctaccaatgtttcat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||| || |||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36433051 |
atcaatgacacttctggaattctatcaatcaacccaaatggaaatctagttctcaacaacaaccttagcaccattcccatttggtctaccgatgtttcac |
36433150 |
T |
|
| Q |
120 |
taacacggtcacaaagaaataacaccaatgttatagctcaactattggatataggaaaccttgttctgaggttaaacgacaccgaaactgccatctggga |
219 |
Q |
| |
|
| | ||||| | ||||| |||| | |||||||||||||||| |||||||||||| ||||| ||| ||||||| ||| |||||| ||| ||||| |
|
|
| T |
36433151 |
tccagcaatcacagataaatagcaccgacgttatagctcaactatctgatataggaaactttgttttgatgttaaacagaaccaaaactgtcatatggga |
36433250 |
T |
|
| Q |
220 |
aagctttcatcatcccacagacacaatgcttccatatataaagcttggttttgatagaaaaattaatcaaagttggttccttcaatcatggaagaccgac |
319 |
Q |
| |
|
|||||| || ||||||| ||||| |||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||| |||||||| || |
|
|
| T |
36433251 |
tagctttgattatcccacggacacttggcttccatatcaaaggcttggttttgatagaaaaactaatcaaagctggttccttcaatcctggaagacagag |
36433350 |
T |
|
| Q |
320 |
gatgaccctggaaaaggtgcgttcacggtgaaattcagcacaattggcaaaccgcagttgtttatgtacaa |
390 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| |||| ||| | ||| | ||||||||||| |
|
|
| T |
36433351 |
gatgaccctggaaaaggtgccttcacgttgaaattcagcaccgttggtaaaactcagctttttatgtacaa |
36433421 |
T |
|
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 34712339 - 34712389
Alignment:
| Q |
20 |
atcaatgacacttctggaattctatcaatcgacccaaatgggaatctagaa |
70 |
Q |
| |
|
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|
|
| T |
34712339 |
atcaatgacacttctggaattctatcaattgaccaaaatggaaatctagaa |
34712389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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