View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10647_4 (Length: 301)
Name: NF10647_4
Description: NF10647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10647_4 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 47299193 - 47299479
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47299193 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattgacgaagg |
47299292 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttg |
200 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47299293 |
tgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaattgtatttg |
47299392 |
T |
|
| Q |
201 |
gcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47299393 |
gcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccacacaggtt |
47299479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 47292586 - 47292872
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
47292586 |
catcattcgtacctctttatccgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaagg |
47292685 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttg |
200 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
47292686 |
tgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagtatcttcttccttaatggtatttg |
47292785 |
T |
|
| Q |
201 |
gcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
47292786 |
gcgaaaaaatttgtttgtattcaagatggttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccatacaggtt |
47292872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 47267662 - 47267376
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
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|
| T |
47267662 |
catcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaagg |
47267563 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttg |
200 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| |||| |||||||||||||||||||| ||||| | | ||||||| |||||| || ||||||| |
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| T |
47267562 |
tgaaatggaaccaagagacgaagcacaacaatgtctgaagtcctaaagaagaaagattgatgaactagggttgtggtatcttcttccttgattgtatttg |
47267463 |
T |
|
| Q |
201 |
gcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
47267462 |
acgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccattagaatctccctattccatacaggtt |
47267376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47283627 - 47283362
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||| |
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|
| T |
47283627 |
catcattcgtacttcttcatctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaagg |
47283528 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggtat |
197 |
Q |
| |
|
|||||||| | |||| |||| | || ||||||| |||| | |||||||||||||||||||||||| || ||||| ||||| |||||| || ||| |
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| T |
47283527 |
tgaaatggaatcaagtgacggattgcagctatgtgagaaagtgtaaagaagaaagattgatggactatggtagtagcagcatcttcttccttgttgatat |
47283428 |
T |
|
| Q |
198 |
ttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
263 |
Q |
| |
|
||| || ||| |||||||| |||||| ||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
47283427 |
ttgacgtaagtatttgttcatattcacgatggttgcaagtaatgcgtggagggtctctagccatta |
47283362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 47242758 - 47242465
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaat----gtggtgcattgacg |
96 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||| || ||| |||||||||||| ||| || ||||| ||| | |
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|
| T |
47242758 |
catcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgcaatgatg |
47242659 |
T |
|
| Q |
97 |
aaggtgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg--- |
193 |
Q |
| |
|
|||||||| ||| |||||| ||||| ||||||| || || | | |||||||||||||||||||||| || |||||||| ||| || ||| |
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|
| T |
47242658 |
aaggtgaattggaaccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtag |
47242559 |
T |
|
| Q |
194 |
gtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
47242558 |
gtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatgtatggagggtctcttgccattagaatctccctattccatacaggtt |
47242465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 47256882 - 47256593
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
||||||||| || |||||||||| |||| |||||||||||||||||| || |||||| |||||| ||||||||||||| ||| ||||| || |||| |
|
|
| T |
47256882 |
catcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccgagaaagg |
47256783 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtat |
197 |
Q |
| |
|
|||| ||| |||||| |||||| | ||||||| || | | | |||||||||||||||||||||| | || |||||||| |||||| ||| |||| |
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|
| T |
47256782 |
tgaagtggaaccaagcgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgtacgtat |
47256683 |
T |
|
| Q |
198 |
ttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
|
|||||| ||| |||||||| |||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47256682 |
ttggcggaagtatttgttcatattcacgatggttgcaagtaatgtatggagggtctcttgccattagaatctccctattccatacaggtt |
47256593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 47279034 - 47278769
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
47279034 |
catcattcgtacttcttcatctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaagg |
47278935 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcag-aagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggta |
196 |
Q |
| |
|
|||||||| | ||| |||||| |||||| || |||| ||||||||||||| |||||||||| || |||| ||||| |||||| || || |
|
|
| T |
47278934 |
tgaaatggaatcaaacgacgaatctcagctatgcgagtaagc-gtaaagaagaaagagtgatggactatggtagcagcaacatcttcttccttgttgata |
47278836 |
T |
|
| Q |
197 |
tttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
263 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
47278835 |
tttgacgaaagtatttgttcgtattcatgatggttgcaagtaacacgtggagggtctcttgccatta |
47278769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 32731425 - 32731136
Alignment:
| Q |
1 |
catcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaagg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||| |||||| | |||||||||| ||||| ||||| ||| ||||| |
|
|
| T |
32731425 |
catcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatgatgaagg |
32731326 |
T |
|
| Q |
101 |
tgaaatgggaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaat---ggtat |
197 |
Q |
| |
|
|||| ||| |||||| ||||| | ||||||| || || | | |||||||||||||||||||||| || |||||||| ||| || || ||||| |
|
|
| T |
32731325 |
tgaattggaaccaagcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtat |
32731226 |
T |
|
| Q |
198 |
ttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggtt |
287 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
32731225 |
ttggcgaaagtatttgttcgtattcacgatggttgcatgtaatacatggagggtctcttgccattagaatctccctattccatacaggtt |
32731136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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