View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10647_low_3 (Length: 272)
Name: NF10647_low_3
Description: NF10647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10647_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 34262257 - 34262389
Alignment:
| Q |
8 |
tagcagagaacattgataaagcaaatgcaatgatacaaaaacagagtactctgttttgtgctatgttttgagacagagttacacataaaaagagaaaaat |
107 |
Q |
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| T |
34262257 |
tagcatagaacattgataaagcaaatgcaatgatacaaaaacagagtactctgtt------------ttgagacagagttacacataaaaagagagaaat |
34262344 |
T |
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| Q |
108 |
gaagaattttttcatacacaaaagaaataccaattattgtagcgg |
152 |
Q |
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| T |
34262345 |
gaagaatttcttcatacacaaaagaaataccaattattgtagcgg |
34262389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 34262456 - 34262495
Alignment:
| Q |
219 |
tttttacatatttattaatattattaatggtgttgttggt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34262456 |
tttttacatatttattaatattattaatggtgttgttggt |
34262495 |
T |
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