View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10647_low_4 (Length: 250)
Name: NF10647_low_4
Description: NF10647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10647_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37497939 - 37498178
Alignment:
| Q |
1 |
aatcaagcaaaatttatctctaaatgtatatctagaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaaatctctttgaag |
100 |
Q |
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| T |
37497939 |
aatcaagcaaaatttatcttcaaatgtatatctagaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaaatctctttgaag |
37498038 |
T |
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| Q |
101 |
tagtaaatcttatccgcagtaaagaatgaaagaataataatgacaattttcctaccaacaaagaatacttgcttactcctacccttttgttgttgtctcc |
200 |
Q |
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| T |
37498039 |
tagtaaatcttatccgcattaaagaatgaaagaataataatgacaattttcctaccaacaaagaatacttgcttactcctacccttttgttgttgtctcc |
37498138 |
T |
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| Q |
201 |
agtatcattcaactcttgcttcaattcccccaagcctatg |
240 |
Q |
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| T |
37498139 |
agtatcattcaactcttgcttcaattcccccaagcctatg |
37498178 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 42601882 - 42601979
Alignment:
| Q |
93 |
ctttgaagtagtaaatcttatccgcagtaaagaatgaaagaataataatgacaattttcctaccaacaaagaat--acttgcttactcctaccctttt |
188 |
Q |
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| T |
42601882 |
ctttgaactagtaaatcttatctgcaataaagaatgaaagaataataatgacaatttttctaccaacaaagaattcccttgctgactcctaccctttt |
42601979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 42601817 - 42601864
Alignment:
| Q |
40 |
cttgactataaaattaagaacagaaagtaatattggtgtattaatacaaat |
90 |
Q |
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| T |
42601817 |
cttgactataaaattaagaacagaa---aatattgatgtattaatacaaat |
42601864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 31321767 - 31321833
Alignment:
| Q |
22 |
aaatgtatatctagaaatcttgactataaaattaagaaca-gaaagtaatattggtgtattaatacaa |
88 |
Q |
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| T |
31321767 |
aaatgtatatat-gaaatcttgactataaaattaagaacataaaagtaatattgatgtattaatacaa |
31321833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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