View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10647_low_7 (Length: 202)
Name: NF10647_low_7
Description: NF10647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10647_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 37497678 - 37497855
Alignment:
| Q |
1 |
gtcttccacttgtctcgatttgatatcagtttcgaggtgaaatattctctagaggcactaattatttttgcttggatgcttaattgattgaaatagcaca |
100 |
Q |
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| T |
37497678 |
gtcttccacttgtctcgatttgatattagtttcgaggtgaaatattct--agaggcactaattatttttgcttggatgcttaattgattgaaatagcaca |
37497775 |
T |
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| Q |
101 |
aactgaaactaacatgaataatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatg |
180 |
Q |
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| T |
37497776 |
aactgaaactaacatgagtaatgaatagtagagaatttcatttcaccttcaactataaatagtacaaggacttgagaatg |
37497855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 37497871 - 37497941
Alignment:
| Q |
132 |
agaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaatacataaagaacgaaataat |
202 |
Q |
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| T |
37497871 |
agaatttcatttcaccttcaaatataaatagtacaaaaacttgaaaatgaatacaaaaagaatgaaataat |
37497941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 31321504 - 31321673
Alignment:
| Q |
10 |
ttgtctcgatttgatatcagtttcgaggtgaaatattctctagaggcactaattatttttgcttggatgcttaattgattgaaatagcacaaactgaaac |
109 |
Q |
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| T |
31321504 |
ttgtctcgatttgatatcaatttcgaggtgaaatgttctatagatgcactaattatttttgcttggatgtttaactga----aacagtacaaactgaaac |
31321599 |
T |
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| Q |
110 |
taacatgaataatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaat |
183 |
Q |
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| T |
31321600 |
taacataaataatgaatagtagagaatgtcatttcaccttcaactacagatagtacaaggacttgagaatgaat |
31321673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 31321667 - 31321740
Alignment:
| Q |
120 |
aatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaatacataaagaa |
193 |
Q |
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||||||| ||| ||||||||||||||||||||| || ||||||||||| ||||||||||| |||| |||||||| |
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| T |
31321667 |
aatgaattgtaaagaatttcatttcaccttcaaatacaaatagtacaataacttgaaaataaatatataaagaa |
31321740 |
T |
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