View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10648_1 (Length: 800)

Name: NF10648_1
Description: NF10648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10648_1
NF10648_1
[»] chr7 (9 HSPs)
chr7 (294-680)||(29666963-29667353)
chr7 (22-230)||(29680841-29681049)
chr7 (22-230)||(29667481-29667689)
chr7 (294-600)||(29680421-29680714)
chr7 (28-229)||(29686642-29686842)
chr7 (303-395)||(29686396-29686487)
chr7 (722-792)||(29666861-29666928)
chr7 (29-101)||(29690370-29690442)
chr7 (40-101)||(29719085-29719146)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 294 - 680
Target Start/End: Complemental strand, 29667353 - 29666963
Alignment:
Q  294 aagaagatggtt-gctcttaattctctatattgatgaatttcttgtctctgaatttcagtttactacttaattat-----tgtgtttctcagtctagttc 387  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     ||||||| ||||||||||||    
T  29667353 aagaagatggtttgctcttaattctctatattgatgaatttcttgtgtctgaatttcagtttactacttaattatattattgtgtttgtcagtctagttc 29667254  T
Q  388 tcatctctttcactcttctatatatttcttgttctcttacaatgattctactacatatcattctcatcatgnnnnnnnnnnnaaaatcgaccgcctccaa 487  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||    
T  29667253 tcatctctctcactcttctatatatttcttgttctcttacaatgattctactacatatcattctcatcatgttttttttt--aaaatcgaccgcctccaa 29667156  T
Q  488 tattaggttaattcacagctgtggtgggatttggtaactttgccttaatttggagagatctaaattatgattgagaatatgttaatttttacaaggcctt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29667155 tattaggttaattcacagctgtggtgggatttggtaactttgccttaatttggagagatctaaattatgattgagaatatgttaatttttacaaggcctt 29667056  T
Q  588 gatgatcttatttattgatcctaatcaagaaatagtagtatagtacaaaaagaattaacataatcattattacaatcactaagaaattaacta 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29667055 gatgatcttatttattgatcctaatcaagaaatagtagtatagtacaaaaagaattaacataatcattattacaatcactaagaaattaacta 29666963  T

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Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 29681049 - 29680841
Alignment:
Q  22 gataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcg 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29681049 gataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcg 29680950  T
Q  122 gtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatctacgtctgtgttttaattttcaagc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  29680949 gtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatttaggtctgtgttttaattttcaagc 29680850  T
Q  222 aaatgaaag 230  Q
    |||||||||    
T  29680849 aaatgaaag 29680841  T

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Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 29667689 - 29667481
Alignment:
Q  22 gataagatttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcg 121  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29667689 gataagattttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcg 29667590  T
Q  122 gtccccgacggtaaggccgagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatatctacgtctgtgttttaattttcaagc 221  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  29667589 ctccccgacggtaaggccaagacccttcagatccaatgactcgccatcttcaacttgaaccattatatttatattcacgtctgtgttttaattttcaagc 29667490  T
Q  222 aaatgaaag 230  Q
    |||||||||    
T  29667489 aaatgaaag 29667481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 294 - 600
Target Start/End: Complemental strand, 29680714 - 29680421
Alignment:
Q  294 aagaagatggttgctcttaattctctatattgatgaatttcttgtctctgaatttcagtttactacttaattattgtgtttctcagtctagttctcatct 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29680714 aagaagatggttgctcttaattctctatattgatgaatttcttgtgtctgaatttcagtttactacttaattattgtgtttgtcagtctagttctcatct 29680615  T
Q  394 ctttcactcttctatatatttcttgttctcttacaatgattctactacatatcattctcatcatg--nnnnnnnnnnnaaaatcgaccgcctccaatatt 491  Q
    || || ||| ||| | ||||||||||||||||| ||||||| ||||||||||||   ||||| ||             |||| |||||||||| ||||||    
T  29680614 ctctctctc-tct-tctatttcttgttctcttaaaatgattatactacatatca---tcatcctggtcatgttcttttaaaaacgaccgcctcgaatatt 29680520  T
Q  492 aggttaattcacagctgtggtgggatttggtaactttgccttaatttggagagatctaaattatgattgagaatatgttaatttttacaaggccttgatg 591  Q
    |||||| ||||||      ||||||||| ||||||||| |    |||||||||||||||||  || |||||||||||||||||||||| |||||||||||    
T  29680519 aggttagttcaca-----tgtgggatttagtaactttgtc----tttggagagatctaaatcttgtttgagaatatgttaatttttac-aggccttgatg 29680430  T

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Target: chr7; HSP #5
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 29686842 - 29686642
Alignment:
Q  28 atttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccccaccatgcaagatgttttcggtcccc 127  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||   || ||||||||| |||||||||||||||||||||| ||    
T  29686842 attttcggtattaggccacctcctagagagagaaccggtgatgccaataacaacacgaacaaaaaaaagttccctaccatgcaagatgttttcggtcacc 29686743  T
Q  128 gacggtaaggccgagacccttcagatccaatga--ctcgccatcttcaacttgaaccattatatttatatctacgtctgtgttttaattttcaagcaaat 225  Q
    | || ||||||| |||||    |||||||| ||  |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  29686742 ggcgataaggccaagacc---aagatccaaggactctcgccatcttcaacttgcaccgttatatttatatctaggtctgtgttttaattttcaagcaaat 29686646  T
Q  226 gaaa 229  Q
    ||||    
T  29686645 gaaa 29686642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 29686487 - 29686396
Alignment:
Q  303 gttgctcttaattctctatattgatgaatttcttgtctctgaatttcagtttactacttaattattgtgtttctcagtctagttctcatctct 395  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||  |||| ||||||||||||||||| |||||||||||| |||||||    
T  29686487 gttgctcttaattctctatattgataaatttcttgtgtctgaatttca-attacaacttaattattgtgtttgtcagtctagttcccatctct 29686396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 722 - 792
Target Start/End: Complemental strand, 29666928 - 29666861
Alignment:
Q  722 aaacagagtacaagcacaactgcaccactatcatcaccagcctcaacattctgcaattcatatttcatctc 792  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  29666928 aaacagagtacaagcacaactgcaccactatca---ccagcctcaacattctgcaattcatatttcatctc 29666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 29690370 - 29690442
Alignment:
Q  29 tttttggtattaggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc 101  Q
    |||| |||| ||||||||| | ||||||||| || ||||||||||||||||| |||||||| || ||||||||    
T  29690370 ttttcggtaataggccaccccgtagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc 29690442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 29719085 - 29719146
Alignment:
Q  40 aggccacctcctagagagagaaccggtgatgccaataacaacaccaaaggaacaaagttccc 101  Q
    |||||||| | ||||||||| || ||||||||||||||||| |||||||| || ||||||||    
T  29719085 aggccaccccatagagagagcactggtgatgccaataacaaaaccaaaggtactaagttccc 29719146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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