View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10648_2 (Length: 528)
Name: NF10648_2
Description: NF10648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10648_2 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Complemental strand, 12530861 - 12530373
Alignment:
| Q |
21 |
caagtatcattggaagctttgcacaacaagggtgaagatcaaaaccacatgaaaagcagtggtaaacaaaaccggtgacactcttttcgcaagcgttaca |
120 |
Q |
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| T |
12530861 |
caagtatcattggaagctttgcacaacaagggtgaagatcaaaaccacatgaaaagcagtggtagacaaaaccggtgacactcttttcgcaagcgttaca |
12530762 |
T |
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| Q |
121 |
ataacgaggtatgtctcccggtggctttgagaggaattggaagcaacattttgggtagaaagggtggaaaagagaaggggatggaatagaacaatgcatg |
220 |
Q |
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| T |
12530761 |
ataacgaggtatgtctcccggtggctttgagaggaattggaagcaacattttgggtagaaagggtggaaaagagaaggggatggaatagaacaatgcatg |
12530662 |
T |
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| Q |
221 |
tgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgtta |
320 |
Q |
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| T |
12530661 |
tgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgtta |
12530562 |
T |
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| Q |
321 |
gtttatgttttggatggctaaaatgagatatctcattgtatctttttgtggtgttcatggttgtgtctttatgattagaaaatttggctatggaatacat |
420 |
Q |
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| T |
12530561 |
gtttatgtttttgatggctaaaatgagatatctcattgtatctttttgtggtgttcatggttgtgtctttatgattagaaaatttggctatggaatacat |
12530462 |
T |
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| Q |
421 |
tattttggannnnnnnnngttgcttacaagaatggatagtatatttggatgtgggaggatagaaaagctatatgaattatatatgatga |
509 |
Q |
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| T |
12530461 |
tattttggatttttttttgttgcttacaagaatggatagtatatttggatgtgggaggatagaaaagctatatgaattatatatgatga |
12530373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 25802181 - 25802039
Alignment:
| Q |
219 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgt |
318 |
Q |
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| T |
25802181 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
25802082 |
T |
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| Q |
319 |
tagtttatgttttggatggctaaaatgagatatctcattgtat |
361 |
Q |
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| T |
25802081 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
25802039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 361
Target Start/End: Complemental strand, 25816274 - 25816132
Alignment:
| Q |
219 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgt |
318 |
Q |
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| T |
25816274 |
tgtgaaggtcattgtcacaaatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatct |
25816175 |
T |
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| Q |
319 |
tagtttatgttttggatggctaaaatgagatatctcattgtat |
361 |
Q |
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| T |
25816174 |
tagtttgtgttttgggtggctgaaatgtgatatctcgttgtat |
25816132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 112394 - 112492
Alignment:
| Q |
263 |
atgccaatttctttgcagccgtcacatttgaatggaaattcggagtattgaaatgttagtttatgttttggatggctaaaatgagatatctcattgtat |
361 |
Q |
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| T |
112394 |
atgcctatttctttgcagccatcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtat |
112492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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