View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10648_3 (Length: 479)

Name: NF10648_3
Description: NF10648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10648_3
NF10648_3
[»] chr4 (39 HSPs)
chr4 (1-471)||(48898880-48899350)
chr4 (149-359)||(45365783-45365993)
chr4 (215-394)||(45371605-45371781)
chr4 (216-404)||(48870915-48871103)
chr4 (216-404)||(48876219-48876407)
chr4 (216-404)||(48886601-48886789)
chr4 (212-387)||(49043703-49043878)
chr4 (213-386)||(48853033-48853206)
chr4 (163-363)||(48155988-48156188)
chr4 (221-361)||(48864395-48864535)
chr4 (162-300)||(7790381-7790519)
chr4 (221-390)||(49038416-49038579)
chr4 (19-252)||(7773495-7773722)
chr4 (75-252)||(7765853-7766033)
chr4 (162-252)||(7771696-7771786)
chr4 (206-252)||(7878728-7878774)
chr4 (213-387)||(49048090-49048264)
chr4 (165-250)||(7237415-7237500)
chr4 (19-124)||(48852851-48852950)
chr4 (7-117)||(49043994-49044095)
chr4 (210-249)||(7786813-7786852)
chr4 (219-294)||(45384520-45384595)
chr4 (220-382)||(48147259-48147415)
chr4 (75-136)||(7786675-7786736)
chr4 (215-252)||(7908656-7908693)
chr4 (222-267)||(47208238-47208283)
chr4 (76-117)||(50669297-50669338)
chr4 (80-120)||(37826798-37826838)
chr4 (9-57)||(48903115-48903163)
chr4 (14-57)||(48705238-48705281)
chr4 (24-136)||(49048361-49048464)
chr4 (14-44)||(48870713-48870743)
chr4 (14-44)||(48886399-48886429)
chr4 (222-252)||(48903316-48903346)
chr4 (7-48)||(48147578-48147619)
chr4 (14-47)||(50250637-50250670)
chr4 (76-108)||(7908549-7908581)
chr4 (84-124)||(45371866-45371906)
chr4 (212-252)||(50666666-50666706)
[»] chr8 (7 HSPs)
chr8 (5-393)||(15349030-15349415)
chr8 (271-390)||(4030320-4030439)
chr8 (80-291)||(12195543-12195754)
chr8 (80-291)||(12439971-12440182)
chr8 (220-250)||(4962191-4962221)
chr8 (80-138)||(12200561-12200619)
chr8 (80-138)||(12444989-12445047)
[»] chr3 (3 HSPs)
chr3 (211-405)||(47451417-47451611)
chr3 (218-252)||(11015161-11015195)
chr3 (75-199)||(11024220-11024344)
[»] chr5 (6 HSPs)
chr5 (156-390)||(9120058-9120292)
chr5 (167-252)||(179364-179449)
chr5 (211-302)||(29688479-29688570)
chr5 (221-362)||(42561896-42562034)
chr5 (211-302)||(29712061-29712152)
chr5 (75-120)||(42562129-42562174)
[»] chr6 (2 HSPs)
chr6 (214-414)||(21016174-21016374)
chr6 (19-57)||(21015994-21016032)
[»] chr2 (1 HSPs)
chr2 (271-390)||(29350832-29350951)
[»] chr7 (2 HSPs)
chr7 (213-252)||(48884176-48884215)
chr7 (80-120)||(48884049-48884089)
[»] chr1 (2 HSPs)
chr1 (215-252)||(24310570-24310607)
chr1 (215-251)||(24416132-24416168)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 48898880 - 48899350
Alignment:
Q  1 ccatgcagggtcactctataatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898880 ccatgcagggtcactctataatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacg 48898979  T
Q  101 gaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48898980 gaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctg 48899079  T
Q  201 caaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48899080 caaattatgctaatgatacagttgaaatatgggtgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcc 48899179  T
Q  301 cactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48899180 cactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagagttg 48899279  T
Q  401 ttagaacattcctctaaatgtgaggatccatgtggtggatcccaagtagttgtctatacaaagtctctgct 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48899280 ttagaacattcctctaaatgtgaggatccatgtggtggatcccaagtagttgtctatacaaagtctctgct 48899350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 149 - 359
Target Start/End: Complemental strand, 45365993 - 45365783
Alignment:
Q  149 cctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaataca 248  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| | ||||||    |||||| |||||||||||||||||||||||||||||||||||| |    
T  45365993 cctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatata 45365894  T
Q  249 aagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattat 348  Q
    ||||    || ||||||||   |||||  |||||||||||||||||||||||||||   ||||||| ||| || |||| ||||||||| ||  |||||||    
T  45365893 aagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtgatattat 45365794  T
Q  349 tggaacagatg 359  Q
    |||||||||||    
T  45365793 tggaacagatg 45365783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 215 - 394
Target Start/End: Complemental strand, 45371781 - 45371605
Alignment:
Q  215 gatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttt 314  Q
    |||||||||||||||||||| |||||||||||||||||  | || ||||||||   |||| ||||||||||||| |||||| |||| |||  ||||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtactttt 45371682  T
Q  315 acccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatgga 394  Q
     ||||||||| ||||||||||| ||  |||| |||||||||||||||     ||||||||||||||||||||||||||||    
T  45371681 ccccattgtgttgtacaaaaagcggtgatataattggaacagatggt---cgtggattggtgaagtatgatgacaatgga 45371605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 404
Target Start/End: Original strand, 48870915 - 48871103
Alignment:
Q  216 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 315  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| ||  |  || |||||     
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48871014  T
Q  316 cccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttgttag 404  Q
    ||||||||||||||||||||||||  ||||||||||| || || |||   ||||||||||||||||||||||||||||| | |||||||    
T  48871015 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttag 48871103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 216 - 404
Target Start/End: Original strand, 48876219 - 48876407
Alignment:
Q  216 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 315  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| ||  |  || |||||     
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48876318  T
Q  316 cccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttgttag 404  Q
    ||||||||||||||||||||||||  ||||||||||| || || |||   ||||||||||||||||||||||||||||| | |||||||    
T  48876319 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttag 48876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 216 - 404
Target Start/End: Original strand, 48886601 - 48886789
Alignment:
Q  216 atacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactttta 315  Q
    ||||| ||||||| ||||||||||| ||||||||||| || || ||||||||   ||||||||||||| || |||||| |||| |   |  || |||||     
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttc 48886700  T
Q  316 cccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttgttag 404  Q
    ||||||||||||||||||||||||  ||||||||||| || || |||   ||||||||||||||||||||||||||||| | |||||||    
T  48886701 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatgacaatggacagttgttag 48886789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 212 - 387
Target Start/End: Complemental strand, 49043878 - 49043703
Alignment:
Q  212 aatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtact 311  Q
    ||||||| |||||||||||||||||||||||||||||||||  | || || |||||   |||||||||| || ||||||||| ||||||||||   ||||    
T  49043878 aatgatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattact 49043779  T
Q  312 tttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatga 387  Q
    |    ||| | || |||||||||| |||  ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  49043778 tcgctccaatatgttgtacaaaaattggtgatattattggaactgatggtgaagttggattggtgaagtatgatga 49043703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 386
Target Start/End: Original strand, 48853033 - 48853206
Alignment:
Q  213 atgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactt 312  Q
    |||||||||||||||||||||| |||||||||||||||||    || ||||||||   ||||||||||||| || ||  |  ||||||||||   |||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactactt 48853132  T
Q  313 ttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatg 386  Q
    || |||| | || |||||||| |||||  ||||||||||||| ||||||||   ||||||||||||||||||||    
T  48853133 ttccccaatatgttgtacaaagagtggtgatattattggaacggatggtgatagtggattggtgaagtatgatg 48853206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 363
Target Start/End: Complemental strand, 48156188 - 48155988
Alignment:
Q  163 tttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctct 262  Q
    ||||||||| |||||||| ||| ||||| |||||||||   |||  |||||||| | ||||||||||||||||||||| |||||||||||  | || |||    
T  48156188 tttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttct 48156089  T
Q  263 tggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtg 362  Q
    |||||    |||||||| ||||||||||||||||||   ||| | | |||||||||| | |||| |||||||| |||  | ||| |||||||||| ||||    
T  48156088 tggactaaaactcttgtccttcctattgatggcatttatactctttccttttacccaatatgctctacaaaaaatggtgacattgttggaacagacggtg 48155989  T
Q  363 a 363  Q
    |    
T  48155988 a 48155988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 361
Target Start/End: Original strand, 48864395 - 48864535
Alignment:
Q  221 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccat 320  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||   || |||||||||||||||||||   ||| |||||  |||||||   || |    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgattttatttccactcggtactttcttcctt 48864494  T
Q  321 tgtgctgtacaaaaagtggctatattattggaacagatggt 361  Q
    | |||| ||||||||||||| ||||||||||||||||||||    
T  48864495 tatgctctacaaaaagtggcgatattattggaacagatggt 48864535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 7790381 - 7790519
Alignment:
Q  162 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctc 261  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| |||||||||||||||||||||||||||||||  | || ||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  262 ttggacggtgactcttgttcttcctattgatggcattcc 300  Q
    ||||||    |||||||||||| ||||||||| ||||||    
T  7790481 ttggactaaaactcttgttctttctattgatgccattcc 7790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 221 - 390
Target Start/End: Complemental strand, 49038579 - 49038416
Alignment:
Q  221 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccat 320  Q
    ||||||||||||||||||||||||||||||||  | || ||||||||   ||||||||||||  |||||  ||||||||||      ||||||| |||      
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccc------tacttttccccta 49038486  T
Q  321 tgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaa 390  Q
    | || ||||||||||||||  |||||||||||||||||||| |   | ||||| ||||||||||||||||    
T  49038485 tatgttgtacaaaaagtggtcatattattggaacagatggttataatcgattgatgaagtatgatgacaa 49038416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 7773722 - 7773495
Alignment:
Q  19 taatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagag 118  Q
    ||||||||||||||||||||||||||| | ||||||||| | |   |||      ||||| |||||| |||||||||||| |||||||||| |||| |||    
T  7773722 taatggggctattcattggttggctttgcgtcgtgatttacgt---tgg------aatgtaattgtttcctttgatttaatggaaaggaaattgtttgag 7773632  T
Q  119 atgtctcctccagatgatttggaacatattcctcagg---attgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatg 215  Q
    ||| ||| |||| || || |  | |||| | |   ||   ||| |||||||||||| |||||||| | | | ||| ||||||||    || |||||||||    
T  7773631 atgcctcttccaaataatgttcaccatagtgcattggtacattctggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatg 7773532  T
Q  216 atacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  7773531 atacagttgaaatatgggtgatgaaagaatacaaagt 7773495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 252
Target Start/End: Original strand, 7765853 - 7766033
Alignment:
Q  75 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcagg---attgtggtttgtgggt 171  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||| ||| |||| ||||| | || || |   |   ||   ||| ||||||||||||    
T  7765853 atgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggt 7765952  T
Q  172 ctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
     | |||||| ||| |||||||||||| |    ||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  7765953 atctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagt 7766033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 7771696 - 7771786
Alignment:
Q  162 gtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||||||||| |||||||| ||| ||||| |||| |||    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagt 7771786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 7878728 - 7878774
Alignment:
Q  206 tatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  7878728 tatgataatgatacagttgaaatatgggtgatgaaagaatacaaagt 7878774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 387
Target Start/End: Complemental strand, 49048264 - 49048090
Alignment:
Q  213 atgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtactt 312  Q
    |||||| |||||||||||||||||||||||| || |||||  | || || |||||   |||| ||||| || ||| ||||| |||||||||    | |||    
T  49048264 atgatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcccacccattgctt 49048165  T
Q  313 ttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatga 387  Q
     |  ||| | ||| |||||||||||||  ||||||||| ||| ||||||||| |||||||||||||||| |||||    
T  49048164 ctctccaatatgccgtacaaaaagtggtgatattattgcaactgatggtgaagttggattggtgaagtacgatga 49048090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 7237500 - 7237415
Alignment:
Q  165 tgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaa 250  Q
    ||||||| |||||||| ||| ||||| ||||||||    |||||| |||||||||| ||| |||||||||||||||||||||||||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaa 7237415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 48852851 - 48852950
Alignment:
Q  19 taatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagag 118  Q
    ||||||||||||||||||||||||||||| || |||||| |  | |||     ||||||| ||||| ||||||||||||| |||||||||||| ||||||    
T  48852851 taatggggctattcattggttggcttttcgtcatgatttac--caatga----ataatgttattgtggcctttgatttaatggaaaggaaacttttagag 48852944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 49044095 - 49043994
Alignment:
Q  7 agggtcactctataatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaagg 106  Q
    |||||| |||| ||||||||||||||| |||||||||||||||| ||||||  ||| |||       ||||| |||||||||||||||||||  ||||||    
T  49044095 agggtcgctctttaatggggctattcactggttggcttttcatcttgattt--atcaatg-------aatgttattgttgcctttgatttaattgaaagg 49044005  T
Q  107 aaactgttaga 117  Q
    ||||| |||||    
T  49044004 aaacttttaga 49043994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 7786813 - 7786852
Alignment:
Q  210 ctaatgatacagttgaaatatgggtgatgaaagaatacaa 249  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  7786813 ctaatgatacaattgaaatatgggtgatgaaagaatacaa 7786852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 45384595 - 45384520
Alignment:
Q  219 cagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatgg 294  Q
    |||||||||||||||||||||||||||| |||||  | || ||||||||   ||||| |||||||||| |||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgatgg 45384520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 382
Target Start/End: Complemental strand, 48147415 - 48147259
Alignment:
Q  220 agttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttaccca 319  Q
    |||||||||||||||||||||||||||||||||  | || ||||||||   |||||||  | |  |||||||||||||||||      ||||||| |||     
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattccc------tacttttcccct 48147322  T
Q  320 ttgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtat 382  Q
     | ||||  |||||||||||  | |||||||||||| ||||||||  || |||| ||||||||    
T  48147321 atatgctccacaaaaagtggtgacattattggaacaaatggtgaaactgaattgttgaagtat 48147259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 7786675 - 7786736
Alignment:
Q  75 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgat 136  Q
    |||||||||||| |||||||||||||||||||| | |||| |||||| ||| |||| |||||    
T  7786675 atgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgat 7786736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 7908656 - 7908693
Alignment:
Q  215 gatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagt 7908693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 47208238 - 47208283
Alignment:
Q  222 ttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggac 267  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggac 47208283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 50669297 - 50669338
Alignment:
Q  76 tgtcattgttgcctttgatttaacggaaaggaaactgttaga 117  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  50669297 tgtcattgttgcctttgatttgatggaaaggaaactgttaga 50669338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 37826838 - 37826798
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagat 120  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  37826838 attgttgcctttaatttaatggaaaggaaactgttagagat 37826798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 48903115 - 48903163
Alignment:
Q  9 ggtcactctataatggggctattcattggttggcttttcatcgtgattt 57  Q
    |||| |||| ||||||||||||||||| |||||||||||||| ||||||    
T  48903115 ggtcgctctttaatggggctattcattagttggcttttcatcatgattt 48903163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 48705281 - 48705238
Alignment:
Q  14 ctctataatggggctattcattggttggcttttcatcgtgattt 57  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  48705281 ctctataatggggctattcattggttggcttatcgtcatgattt 48705238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 49048464 - 49048361
Alignment:
Q  24 gggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtc 123  Q
    |||||||||| |||||||||||||||| ||||||  ||| |||       ||||| |||||||||||||||||||||||||| || ||  |||| |||||    
T  49048464 gggctattcactggttggcttttcatcttgattt--atcgatg-------aatgttattgttgcctttgatttaacggaaagaaaccttgtagatatgtc 49048374  T
Q  124 tcctccagatgat 136  Q
    ||  |||||||||    
T  49048373 tctgccagatgat 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 48870713 - 48870743
Alignment:
Q  14 ctctataatggggctattcattggttggctt 44  Q
    |||||||||||||||||||||||||||||||    
T  48870713 ctctataatggggctattcattggttggctt 48870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 48886399 - 48886429
Alignment:
Q  14 ctctataatggggctattcattggttggctt 44  Q
    |||||||||||||||||||||||||||||||    
T  48886399 ctctataatggggctattcattggttggctt 48886429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 48903316 - 48903346
Alignment:
Q  222 ttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||||||||||||||||||||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagt 48903346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 48147619 - 48147578
Alignment:
Q  7 agggtcactctataatggggctattcattggttggcttttca 48  Q
    ||||||||| | || |||||||||||||||||||||||||||    
T  48147619 agggtcactttttagtggggctattcattggttggcttttca 48147578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 50250670 - 50250637
Alignment:
Q  14 ctctataatggggctattcattggttggcttttc 47  Q
    |||| |||||||||||||||||||||||||||||    
T  50250670 ctctttaatggggctattcattggttggcttttc 50250637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 7908549 - 7908581
Alignment:
Q  76 tgtcattgttgcctttgatttaacggaaaggaa 108  Q
    ||||||||||||||||||||||| |||||||||    
T  7908549 tgtcattgttgcctttgatttaatggaaaggaa 7908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 45371906 - 45371866
Alignment:
Q  84 ttgcctttgatttaacggaaaggaaactgttagagatgtct 124  Q
    ||||||||||||||| |||| ||||||| ||||||||||||    
T  45371906 ttgcctttgatttaatggaacggaaacttttagagatgtct 45371866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 50666666 - 50666706
Alignment:
Q  212 aatgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    ||||||||| ||||| ||||||||||| |||||||||||||    
T  50666666 aatgatacaattgaattatgggtgatgtaagaatacaaagt 50666706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 5 - 393
Target Start/End: Original strand, 15349030 - 15349415
Alignment:
Q  5 gcagggtcactctataatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaa 104  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||   ||| |||  ||||||  | |||||||| ||||||||||  ||||    
T  15349030 gcagggtgtctctataatggggctattcattggttggcttttcatcgtgattt---tccttggcgtgataactttattgttgcatttgatttaaacgaaa 15349126  T
Q  105 ggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaa 204  Q
    |||||||||| |||||| |||||||||||||||| ||||||  | ||   ||||||||||||||||||||||| || ||||| ||| | ||| || |  |    
T  15349127 ggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttggcgaattttttagtctttggtctacgga 15349226  T
Q  205 ttatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccact 304  Q
    |||| |||||||||   ||||||||||||||||||||||||||||||| || || ||||||||   || ||||||||||  ||||||||    ||| |||    
T  15349227 ttatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttcttaatattgatgatgatccaact 15349326  T
Q  305 atgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatgg 393  Q
     ||||||||||||| |||||| ||||||| |||||  |||||||||||| | ||| ||   ||| ||||||||||||||||||||||||    
T  15349327 ctgtacttttaccctttgtgccgtacaaagagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatgacaatgg 15349415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 390
Target Start/End: Complemental strand, 4030439 - 4030320
Alignment:
Q  271 gactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttgga 370  Q
    ||||||||||||  |||||||||||||| ||| || |||||||| |||| |||||| ||||| ||||||  |||||||||||||| ||||||    || |    
T  4030439 gactcttgttctgtctattgatggcatttccattaagtacttttccccaatgtgctctacaataagtggtgatattattggaacatatggtggtactgaa 4030340  T
Q  371 ttggtgaagtatgatgacaa 390  Q
    ||||||||||||||||||||    
T  4030339 ttggtgaagtatgatgacaa 4030320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 12195543 - 12195754
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 179  Q
    ||||||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| ||||||     
T  12195543 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12195642  T
Q  180 attttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgt 279  Q
    | ||| ||||| |||||  |   |||| || ||||   |||||||||||||||| ||||||||||||||||  | |||| ||||||||   |||||||||    
T  12195643 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T
Q  280 tcttcctattga 291  Q
      ||||||||||    
T  12195743 aattcctattga 12195754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 291
Target Start/End: Original strand, 12439971 - 12440182
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggag 179  Q
    ||||||| ||||||||||| |||||||||| ||||||||||  ||| |||||||||||  || |||  |||  || ||| |||||||||||| ||||||     
T  12439971 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttggaa 12440070  T
Q  180 attttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgt 279  Q
    | ||| ||||| |||||  |   |||| || ||||   |||||||||||||||| ||||||||||||||||  | |||| ||||||||   |||||||||    
T  12440071 aatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T
Q  280 tcttcctattga 291  Q
      ||||||||||    
T  12440171 aattcctattga 12440182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 4962221 - 4962191
Alignment:
Q  220 agttgaaatatgggtgatgaaagaatacaaa 250  Q
    |||||||||||||||||||||||||||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaa 4962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 12200561 - 12200619
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgattt 138  Q
    ||||||||||||||||||| |||||||||| || |||||||   || ||||||||||||    
T  12200561 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgattt 12200619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 12444989 - 12445047
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgattt 138  Q
    ||||||||||||||||||| |||||||||| || |||||||   || ||||||||||||    
T  12444989 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgattt 12445047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 405
Target Start/End: Complemental strand, 47451611 - 47451417
Alignment:
Q  211 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtac 310  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || ||||||     ||||||||||||||||||||||||||||||| ||  ||||    
T  47451611 taatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtac 47451512  T
Q  311 ttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttgttaga 405  Q
    |||||||| ||   || ||||||||||||  |||||||||||||||||| |||    |||||||| |||||| ||||||| ||| | ||||||||    
T  47451511 ttttaccccttaacctctacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatgacaaaggacagttgttaga 47451417  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 11015195 - 11015161
Alignment:
Q  218 acagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    ||||||||||||||||| |||||||||||||||||    
T  11015195 acagttgaaatatgggttatgaaagaatacaaagt 11015161  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 11024344 - 11024220
Alignment:
Q  75 atgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctt 174  Q
    |||| ||| ||||||||||||||  ||||||| |||| || |||||| ||  |||||||| ||| || |||   |||  |||||||| ||||||| | ||    
T  11024344 atgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatt 11024245  T
Q  175 tggagattttttcagtatatgggct 199  Q
    |||||| ||| ||||| ||||||||    
T  11024244 tggagaatttctcagtctatgggct 11024220  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 156 - 390
Target Start/End: Original strand, 9120058 - 9120292
Alignment:
Q  156 attgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtaaa 255  Q
    |||||| | ||||||| |||||||| ||| ||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||  |    
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  256 atcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaaca 355  Q
     |||||||||| |   ||||||||| |  ||||||| |||||| |||||| |   |||| |||  | || |  |||||||||||  |||| |||||||||    
T  9120158 ttcctcttggaagaaaactcttgttttgtctattgacggcatttccactaagctattttcccctatatgttcaacaaaaagtggtgatatcattggaaca 9120257  T
Q  356 gatggtgaatttggattggtgaagtatgatgacaa 390  Q
    || | || ||   |||||||||||||| |||||||    
T  9120258 gaagatggatggagattggtgaagtataatgacaa 9120292  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 179364 - 179449
Alignment:
Q  167 tgggtctttggagattttttcagtatatgggctgcaaattatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    ||||| |||||| | ||| ||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagt 179449  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 29688479 - 29688570
Alignment:
Q  211 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccca 302  Q
    ||||| ||||||||||||||||||||||||| ||||||| ||  |||| ||||||||   |||||| |||||| || ||| || ||||||||    
T  29688479 taatggtacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattccca 29688570  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 362
Target Start/End: Complemental strand, 42562034 - 42561896
Alignment:
Q  221 gttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctat---tgatggcattcccactatgtacttttacc 317  Q
    ||||| ||||||||||||||||||||||||||  | || ||||||||   || |||||||||||||||   ||||| |||||||      ||||||| ||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcctatttatgatgacattccc------tacttttgcc 42561941  T
Q  318 cattgtgctgtacaaaaagtggctatattattggaacagatggtg 362  Q
    | || | || |||||||| |||  |||||||||||||||||||||    
T  42561940 ctttatcctatacaaaaaatggtgatattattggaacagatggtg 42561896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 302
Target Start/End: Complemental strand, 29712152 - 29712061
Alignment:
Q  211 taatgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattccca 302  Q
    ||||| |||||||||||||||||||||| || ||||||| || | ||| ||||||||   |||||||||| |  || ||||||| |||||||    
T  29712152 taatggtacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgttttgtcttttgatggaattccca 29712061  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 42562174 - 42562129
Alignment:
Q  75 atgtcattgttgcctttgatttaacggaaaggaaactgttagagat 120  Q
    |||| |||||||||||| |||||||||||||||||||  |||||||    
T  42562174 atgttattgttgcctttcatttaacggaaaggaaacttctagagat 42562129  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 414
Target Start/End: Original strand, 21016174 - 21016374
Alignment:
Q  214 tgatacagttgaaatatgggtgatgaaagaatacaaagtaaaatcctcttggacggtgactcttgttcttcctattgatggcattcccactatgtacttt 313  Q
    ||||| ||||||||||||||| |||||||||||||||||| | || ||||||||   |||||||  | |  ||||||||| ||||||||||   || ||     
T  21016174 tgatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcccactcgttatttc 21016273  T
Q  314 tacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatgacaatggagatttgttagaacattcct 413  Q
    |  ||| | || ||||||||||||||  ||||||||||||||||||||  |  ||||||||||| ||||||||| |||||| | ||||||||  ||||||    
T  21016274 tctccaatatgttgtacaaaaagtggtgatattattggaacagatggtacagctggattggtgaggtatgatgaaaatggacagttgttagagtattcct 21016373  T
Q  414 c 414  Q
    |    
T  21016374 c 21016374  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 21015994 - 21016032
Alignment:
Q  19 taatggggctattcattggttggcttttcatcgtgattt 57  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  21015994 taatggggctattcattggttggcttttcgtcatgattt 21016032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 390
Target Start/End: Original strand, 29350832 - 29350951
Alignment:
Q  271 gactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaaaagtggctatattattggaacagatggtgaatttgga 370  Q
    ||||||||||||  |||||||||||||| ||| || ||| |||  |||| |||||| ||||| | ||||  ||||||||||||| |||||||    || |    
T  29350832 gactcttgttctgtctattgatggcatttccaataagtattttgccccaatgtgctctacaataggtggtgatattattggaacggatggtggtactgaa 29350931  T
Q  371 ttggtgaagtatgatgacaa 390  Q
    |||||||||||| |||||||    
T  29350932 ttggtgaagtattatgacaa 29350951  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 48884176 - 48884215
Alignment:
Q  213 atgatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  48884176 atgataaagttgaaatataggtgatgaaagaatacaaagt 48884215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 48884049 - 48884089
Alignment:
Q  80 attgttgcctttgatttaacggaaaggaaactgttagagat 120  Q
    |||| |||||||||||||| ||||| |||||||||||||||    
T  48884049 attgctgcctttgatttaatggaaaagaaactgttagagat 48884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 24310570 - 24310607
Alignment:
Q  215 gatacagttgaaatatgggtgatgaaagaatacaaagt 252  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagt 24310607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 24416132 - 24416168
Alignment:
Q  215 gatacagttgaaatatgggtgatgaaagaatacaaag 251  Q
    |||| |||||| |||||||||||||||||||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaag 24416168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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