View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10648_4 (Length: 470)
Name: NF10648_4
Description: NF10648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10648_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 33618605 - 33618165
Alignment:
| Q |
1 |
ttcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggcgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618605 |
ttcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggcgga |
33618506 |
T |
|
| Q |
101 |
aagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33618505 |
aagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgttggaaaaacgggatt |
33618406 |
T |
|
| Q |
201 |
gcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618405 |
gcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagtt |
33618306 |
T |
|
| Q |
301 |
cttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttctaccaagccgtttggtgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618305 |
cttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttctaccaagccgtttggtgt |
33618206 |
T |
|
| Q |
401 |
atcggtaatgaggaaggaaccgattgtcatcacagctgcag |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618205 |
atcggtaatgaggaaggaaccgattgtcatcacagctgcag |
33618165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 433
Target Start/End: Complemental strand, 33609428 - 33608998
Alignment:
| Q |
3 |
cccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaa |
102 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
33609428 |
cccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacacaaggctaacggatccaagtacaatggcggaaa |
33609329 |
T |
|
| Q |
103 |
gtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgc |
202 |
Q |
| |
|
|||||| ||||| |||| || |||||||| || |||||||| |||||||| || || || ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
33609328 |
ttaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgc |
33609229 |
T |
|
| Q |
203 |
aaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttct |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||| |||| |||| | |||| ||||||||| |
|
|
| T |
33609228 |
aaatgccatcaccaagtgaggtcgatactccctttttaatatggttttaaagggctcttggttaaccgattttgcaagttctattgacttaataagttct |
33609129 |
T |
|
| Q |
303 |
tctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttctaccaagccgtttggtgtat |
402 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| | ||||||||||| || |||| ||| ||||| | |
|
|
| T |
33609128 |
tctaactcaggttcaatatcaactgaggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttgggtgtgt |
33609029 |
T |
|
| Q |
403 |
cggtaatgaggaaggaaccgattgtcatcac |
433 |
Q |
| |
|
| | |||||||||||||| ||||||||||| |
|
|
| T |
33609028 |
ccgatatgaggaaggaaccaattgtcatcac |
33608998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 3 - 441
Target Start/End: Complemental strand, 33627818 - 33627380
Alignment:
| Q |
3 |
cccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggcggaaa |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| || | || ||||| ||| |||| |||| ||||| ||||||||||| || |||| |
|
|
| T |
33627818 |
cccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatgcaaggttaacaacgccaagtataatcgcagaaa |
33627719 |
T |
|
| Q |
103 |
gtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgc |
202 |
Q |
| |
|
|||||| | | |||||| || |||| ||| ||||||||| |||||||| || || | ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
33627718 |
gtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgc |
33627619 |
T |
|
| Q |
203 |
aaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttct |
302 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||| ||| || | ||||||||| |
|
|
| T |
33627618 |
tatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttct |
33627519 |
T |
|
| Q |
303 |
tctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttctaccaagccgtttggtgtat |
402 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||| |||||| |||| |||| ||||||||||||||||||||||||||| || |||| ||| ||||| | |
|
|
| T |
33627518 |
tctaactcaggttcaatatcaatggaagatcctctgattttgtgtaatgcttttttggcttgctctatcttaccacgttcgactaagctgttgggtgtgt |
33627419 |
T |
|
| Q |
403 |
cggtaatgaggaaggaaccgattgtcatcacagctgcag |
441 |
Q |
| |
|
| || |||||||||| ||| ||||| || |||||||||| |
|
|
| T |
33627418 |
cagttatgaggaaggcaccaattgtaattacagctgcag |
33627380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 83 - 433
Target Start/End: Complemental strand, 33588632 - 33588282
Alignment:
| Q |
83 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
182 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
|
| Q |
183 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
282 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33588433 |
T |
|
| Q |
283 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
382 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
|
|
| T |
33588432 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33588333 |
T |
|
| Q |
383 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
433 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33588332 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33588282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 83 - 433
Target Start/End: Complemental strand, 33595804 - 33595454
Alignment:
| Q |
83 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
182 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
|
| Q |
183 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
282 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33595605 |
T |
|
| Q |
283 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
382 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
|
|
| T |
33595604 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33595505 |
T |
|
| Q |
383 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
433 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33595504 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33595454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 83 - 433
Target Start/End: Complemental strand, 33602935 - 33602585
Alignment:
| Q |
83 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
182 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
|
|
| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
|
| Q |
183 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
282 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| ||||||||||||||||||| || | |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaattt |
33602736 |
T |
|
| Q |
283 |
ctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
382 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||| ||||| | || |||| ||||||| |||||||| |||||||| |
|
|
| T |
33602735 |
ctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttc |
33602636 |
T |
|
| Q |
383 |
taccaagccgtttggtgtatcggtaatgaggaaggaaccgattgtcatcac |
433 |
Q |
| |
|
||||||| | | ||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
33602635 |
aaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcac |
33602585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 382
Target Start/End: Complemental strand, 33622658 - 33622413
Alignment:
| Q |
137 |
aaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctt |
236 |
Q |
| |
|
||||||||| |||||||| || || ||||||||| ||||||||| |||| |||| ||| |||||| || ||||| | | |||||| |||| || ||| |
|
|
| T |
33622658 |
aaagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctctt |
33622559 |
T |
|
| Q |
237 |
tttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccgaggatcctc |
336 |
Q |
| |
|
|||| ||||||||||||||| |||| || |||||||| |||||| ||| |||| ||| ||||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
33622558 |
tttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttcaaactcaggttcaatatcaatggaggatcctt |
33622459 |
T |
|
| Q |
337 |
taattttgcgtaaggcttgtttggcttgctctatcttaccacgttc |
382 |
Q |
| |
|
| ||| |||||||||||| || ||| |||||||||| ||||||| |
|
|
| T |
33622458 |
tgattatgcgtaaggctttttcagctctctctatcttatcacgttc |
33622413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 33563045 - 33562979
Alignment:
| Q |
165 |
atgttgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatatt |
231 |
Q |
| |
|
||||||||||| || || ||||| |||| ||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563045 |
atgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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