View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10648_5 (Length: 443)
Name: NF10648_5
Description: NF10648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10648_5 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 1167085 - 1167498
Alignment:
| Q |
1 |
ttgattctatgcacaatttctttgcagtatgcttgtacggatgtcgaataatatcctaacgtgaggactgaggacacttgaggccattgtcctagatttg |
100 |
Q |
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| T |
1167085 |
ttgattctttgcacaatttctttgcagtatgcttgtagggttggacaacaatatcctaacgtgaggactgaggacacttgaggccattgtcctagatttg |
1167184 |
T |
|
| Q |
101 |
atagtcattagcggtgtaaaagtattttaattgttgtattgacacagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtt |
200 |
Q |
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| T |
1167185 |
atagtcattagcggtgtaaaaatattttaattgttgtattgacacagagacatgcaatatttttaggcgttcaattgtcttctggttcttagttagggtt |
1167284 |
T |
|
| Q |
201 |
tgcaagacagcaagagtttgtggtaatataaacaaaaatgcatgaaagtaaggaaactttacaagctaaaagacttgtttgggttagacttcattaaata |
300 |
Q |
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| T |
1167285 |
tgcaagacagcaagagtttgtggtaatataaacaaaaatgcataaaagtaaggaaactttacaagctaaaagacttatttgggttagacttcattaaata |
1167384 |
T |
|
| Q |
301 |
ctcctaaattgtatctttttgatcgattatataattttatattttcaattatatcttcacttgtcgcttttggttttcgtgtccgtaaaacgaagagaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
1167385 |
ctcctaaattgtatctttttgatcgattatataattttatattttcaattatatcttcacttgtcgcttttggttttcgtgtccgtgaaacgacgagaaa |
1167484 |
T |
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| Q |
401 |
tctatcgtactttt |
414 |
Q |
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| T |
1167485 |
tctatcgtactttt |
1167498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 3923984 - 3924029
Alignment:
| Q |
320 |
tgatcgattatataattttatattttcaattatatcttcacttgtc |
365 |
Q |
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||||| |||||||| ||||| |||||||||||||||| |||||||| |
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| T |
3923984 |
tgatcaattatatacttttagattttcaattatatctccacttgtc |
3924029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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