View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10649_low_1 (Length: 315)

Name: NF10649_low_1
Description: NF10649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10649_low_1
NF10649_low_1
[»] chr6 (10 HSPs)
chr6 (1-299)||(11170414-11170712)
chr6 (1-299)||(11275798-11276096)
chr6 (1-299)||(11209236-11209534)
chr6 (113-297)||(11196679-11196863)
chr6 (113-297)||(11156226-11156410)
chr6 (113-297)||(11199844-11200028)
chr6 (113-297)||(11161093-11161277)
chr6 (180-284)||(11133017-11133121)
chr6 (132-236)||(11241511-11241615)
chr6 (210-296)||(11314762-11314848)
[»] scaffold1207 (1 HSPs)
scaffold1207 (1-299)||(732-1030)
[»] chr8 (1 HSPs)
chr8 (211-287)||(12528558-12528634)
[»] chr7 (1 HSPs)
chr7 (119-287)||(8581662-8581830)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11170414 - 11170712
Alignment:
Q  1 tccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcga 100  Q
    ||||||||| | |||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170414 tccatgcaccggtcaaaaagactcttactgagattgtcgaaaattccacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcga 11170513  T
Q  101 tctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatg 200  Q
    | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  11170514 tgtcagtcttattattggatgaaagtgtacattttgctctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcgagtttatg 11170613  T
Q  201 ttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170614 ttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatc 11170712  T

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Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11275798 - 11276096
Alignment:
Q  1 tccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcga 100  Q
    ||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||||||||  ||||||||||||  |||||  | |||||| |||||||| |    
T  11275798 tccatgcactggtaaaaaagactcttgttgagatcatcgaactttgcacgactaatcaacgaggagaaatctgtaccttggtttaaacattctatctcaa 11275897  T
Q  101 tctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatg 200  Q
    |   ||||| | |||||   |||||| | | |||| || ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||   ||||||    
T  11275898 tggtagtctcactattgacagaaagtatcctttttactctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcatttttatg 11275997  T
Q  201 ttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatc 299  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11275998 cttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccaatggccttaacattgatatc 11276096  T

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Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 11209236 - 11209534
Alignment:
Q  1 tccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcga 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||  |||  | ||||||| ||||| || ||||||||||||||| |    
T  11209236 tccatgcactggtcaaaaagactcttgttgagatcgtcgaactttgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctatctcaa 11209335  T
Q  101 tctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatg 200  Q
    | | ||||  | |||||   |||||| | | ||||||| ||||||||||||||||||||||| ||| ||||||||||  ||||||||| || | ||| |     
T  11209336 tgttagtcgcagtattgacagaaagtatcctttttgctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttc 11209435  T
Q  201 ttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatc 299  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  11209436 cttcctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctgcaatagccttaacattgatatc 11209534  T

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Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 11196679 - 11196863
Alignment:
Q  113 tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa 212  Q
    ||||||| |||||| | | |||||||||||||||||||| ||||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||    
T  11196679 tattggaagaaagtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa 11196778  T
Q  213 ctctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgata 297  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||    
T  11196779 ctctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgata 11196863  T

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Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 11156226 - 11156410
Alignment:
Q  113 tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa 212  Q
    ||||||| |||||| | | |||||||||||||||||||| ||||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||    
T  11156226 tattggaagaaagtatcctttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa 11156325  T
Q  213 ctctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgata 297  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||    
T  11156326 ctcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgata 11156410  T

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Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 11199844 - 11200028
Alignment:
Q  113 tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa 212  Q
    ||||||| |||||| | | |||||||||||||||||||| ||||  |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||    
T  11199844 tattggaagaaagtatcctttttgctttctcgcaagcagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa 11199943  T
Q  213 ctctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgata 297  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||    
T  11199944 ctctttcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagtgtctcctgcaatcgccttaacattgata 11200028  T

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Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 113 - 297
Target Start/End: Original strand, 11161093 - 11161277
Alignment:
Q  113 tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa 212  Q
    ||||||| |||||| | | ||||||||||||||||||||  |||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||    
T  11161093 tattggaagaaagtatcctttttgctttctcgcaagcagagttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa 11161192  T
Q  213 ctctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgata 297  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| || | |||||||||||||||    
T  11161193 ctctttcacaaaatggttcaccattgtattatcaaagtcttgtcccctaaggtgagtgtctcctgcaatcgccttaacattgata 11161277  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 11133017 - 11133121
Alignment:
Q  180 tccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctcca 279  Q
    ||||||||| || | |||||| || ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| |||||  ||    
T  11133017 tccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagca 11133116  T
Q  280 gtggc 284  Q
    |||||    
T  11133117 gtggc 11133121  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 11241615 - 11241511
Alignment:
Q  132 ttttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatggttc 231  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||  || |||||| |||| |||||  || ||| |||||||||||||||||||||||    
T  11241615 ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatggttc 11241516  T
Q  232 accat 236  Q
    |||||    
T  11241515 accat 11241511  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 11314848 - 11314762
Alignment:
Q  210 gaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgat 296  Q
    |||| ||| ||||||||  |||||||||| |||||  |||||||||||||| |||||||||||||| |||  |||| |||| |||||    
T  11314848 gaacacttccacaaaatatttcaccattgtattattgaagtcttgtcccccaaggtgagtgtctccgccaacggccctaactttgat 11314762  T

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Target: scaffold1207 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 732 - 1030
Alignment:
Q  1 tccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcga 100  Q
    ||||||||||| | ||||||||||||| ||||||| || || |||||||||||||||   |||||||||| |  |||||  | |||||| |||||||| |    
T  732 tccatgcactggttaaaaagactcttgttgagatcatcaaactttgcacgactaatcgacgaggagaaatttgtaccttggtttaaacactctatctcaa 831  T
Q  101 tctcagtctgattattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatg 200  Q
    |   ||||| | |||||   |||||| | | ||||| | |||| |||||||||||||||||| ||| ||||||||||  ||||||||| |||| |||||     
T  832 tggtagtctaagtattgacagaaagtatcctttttgatctctcacaagcagtcttcagcctcctaacggctcttggatctccactaatgtcgattttata 931  T
Q  201 ttttctcaagaactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggccttaacattgatatc 299  Q
     || || |||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| || | |||||||||||||||||    
T  932 cttccttaagaacactttcacaaaatggttcaccattgcgttatcaaagtcttgccccctgaggtgagtgtctcctacaatagccttaacattgatatc 1030  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 12528558 - 12528634
Alignment:
Q  211 aactctttcacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggcctt 287  Q
    |||||||||||||| || |||||||||  |||||||||||| | ||| || ||||||||||||||  ||||||||||    
T  12528558 aactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggcctt 12528634  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 8581662 - 8581830
Alignment:
Q  119 atgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactcttt 218  Q
    |||||||||| | ||| ||| |||| ||||||||| ||| |||  |||||||| |||||  |||| |||| ||   |||||||||||||  ||||||       
T  8581662 atgaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttccaataatctcctctttatgttttctcttgaactccga 8581761  T
Q  219 cacaaaatggttcaccattgcattatcaaagtcttgtcccccgaggtgagtgtctcctccagtggcctt 287  Q
    |||||| || |||||||||   |||||||| ||||  || || ||||||||||||||  ||||||||||    
T  8581762 cacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagtggcctt 8581830  T

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