View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1064_high_3 (Length: 382)
Name: NF1064_high_3
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 12514093 - 12514355
Alignment:
| Q |
107 |
gaaactataatatttataagnnnnnnnaggccatacttacggttattaaaatcacatatatatagctgttaatacatgaattttgttttactgaacaagt |
206 |
Q |
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| T |
12514093 |
gaaactataatatttataagtttttttaggccatacttacggttattaaaatcacatatatatagctgttaatacatgaattttgttttactgaacaagt |
12514192 |
T |
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| Q |
207 |
gtatggaatcgtgatagtgctctttcctcctaactaaatttgttttatacaactaaaaaattaaacttattggcctacacacttaactagcaaagtccaa |
306 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514193 |
gtagtgaatcgtgatagtgctctttcct---aactaaatttgttttatacaactaaaaaattaaacttattggcctacacacttaactagcaaagtccaa |
12514289 |
T |
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| Q |
307 |
caactctttctcaatgcaatttaatgcagaaggcaaagagagagacctttgtgagagttttctctg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12514290 |
caactctttctcaatgcaatttaatgcagaaggcaaagagagagacctttgtgagagttttctctg |
12514355 |
T |
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