View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1064_high_5 (Length: 292)
Name: NF1064_high_5
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 287
Target Start/End: Original strand, 2338214 - 2338416
Alignment:
| Q |
91 |
ttagaatatttatcacaaaatagacacattaaatacattgttagtatttatttatatatgtggaaatatagttattgagtagtaaatttc------nnnn |
184 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2338214 |
ttagaatatttatcgcaaaatagacacattaaatacattgttagtatttctttatatatgtggaaatatagttattgagtagtaaatttcaatttttttt |
2338313 |
T |
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| Q |
185 |
nnnnnnttgaatcctttaatctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatatattcttg |
284 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
2338314 |
ttttttttgcatcctttaatctacttatggtgacttgataaatttgcagaacttgcatacaccatggttgtgagtgaaaagtgcgatgtatatagttttg |
2338413 |
T |
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| Q |
285 |
gag |
287 |
Q |
| |
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||| |
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| T |
2338414 |
gag |
2338416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 287
Target Start/End: Original strand, 2330256 - 2330560
Alignment:
| Q |
10 |
aaatatattcacttattttagagttaaatttttctacaataaatttaatctgtttctctttcaaaggtatttttagaatat------------------- |
90 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2330256 |
aaatatattcacttattttagagttaaattttctaataataaatttaatccgtttctctttcaaaggtatttttagaatatttagaacatttatcacaaa |
2330355 |
T |
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| Q |
91 |
ttagaatatttatcacaaaatagacacattaaatacattgttagtatttatttatatatgtggaaatatagttattgagtagtaaatttc--------nn |
182 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |
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| T |
2330356 |
ttagaatatttatcgcaaaatagacacattaaatacattgttagtatttctttatatatgtggaaatatagttattgagcagcaaatttcaattattatt |
2330455 |
T |
|
| Q |
183 |
nnnnnnnnttgaatcctttaatctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatatattct |
282 |
Q |
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||| ||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| | | |
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| T |
2330456 |
ttttttttttgcatcatttaatctacatatggtgacttgataaatttgcagaacttgcatacaccatggttgtgagtgaaaagtgcgatgtatatagttt |
2330555 |
T |
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| Q |
283 |
tggag |
287 |
Q |
| |
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||||| |
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| T |
2330556 |
tggag |
2330560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 2321863 - 2321937
Alignment:
| Q |
204 |
tctacttatggtgacttgataaatatgcagaacttgcataccccatggttgtgagtgaaaagtgcgatgtatata |
278 |
Q |
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|||||| ||||||| ||||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
2321863 |
tctactaatggtgatttgatcaatatgcagaacttgcctatactatggttgtgagtgaaaagtgcgatgtatata |
2321937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 2338154 - 2338186
Alignment:
| Q |
10 |
aaatatattcacttattttagagttaaattttt |
42 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2338154 |
aaatatattcacttattttagagttaaattttt |
2338186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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