View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1064_high_6 (Length: 289)

Name: NF1064_high_6
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1064_high_6
NF1064_high_6
[»] chr5 (10 HSPs)
chr5 (29-276)||(13447054-13447301)
chr5 (29-276)||(13419503-13419750)
chr5 (29-276)||(13426394-13426641)
chr5 (39-271)||(13413168-13413400)
chr5 (39-276)||(13388997-13389234)
chr5 (164-276)||(13385176-13385288)
chr5 (165-274)||(13454143-13454252)
chr5 (37-111)||(13454015-13454089)
chr5 (39-118)||(13393562-13393641)
chr5 (203-276)||(13393404-13393477)
[»] chr4 (2 HSPs)
chr4 (57-131)||(47601353-47601427)
chr4 (234-274)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 13447054 - 13447301
Alignment:
Q  29 accggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447054 accggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 13447153  T
Q  129 cgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatccca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13447154 cgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatccca 13447253  T
Q  229 cccctactttgtctccaactttaaacttttttactttgcttcccacct 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447254 cccctactttgtctccaactttaaacttttttactttgcttcccacct 13447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 13419503 - 13419750
Alignment:
Q  29 accggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 128  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||    
T  13419503 accggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatca 13419602  T
Q  129 cgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatccca 228  Q
    ||| ||||  ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||    
T  13419603 cgatactttgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatccca 13419702  T
Q  229 cccctactttgtctccaactttaaacttttttactttgcttcccacct 276  Q
    | || ||||||||||||||||||||||||| |||||||||||| ||||    
T  13419703 caccaactttgtctccaactttaaacttttctactttgcttccaacct 13419750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 13426394 - 13426641
Alignment:
Q  29 accggcaccatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatca 128  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||    
T  13426394 accggcaacatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatca 13426493  T
Q  129 cgagacttaccattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatccca 228  Q
    ||| ||||| ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||    
T  13426494 cgatacttagcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatccca 13426593  T
Q  229 cccctactttgtctccaactttaaacttttttactttgcttcccacct 276  Q
    | |||||||||||||||||||||||||||| |||||||||||| ||||    
T  13426594 ctcctactttgtctccaactttaaacttttctactttgcttccaacct 13426641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 271
Target Start/End: Original strand, 13413168 - 13413400
Alignment:
Q  39 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 138  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  139 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 238  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || ||||||||    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  239 gtctccaactttaaacttttttactttgcttcc 271  Q
    |||||||||||||||||| |  |||||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcc 13413400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 276
Target Start/End: Complemental strand, 13389234 - 13388997
Alignment:
Q  39 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 138  Q
    ||||| ||||| | |||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||      
T  13389234 tcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttgg 13389135  T
Q  139 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 238  Q
    ||    ||||   |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||    
T  13389134 caccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctacttt 13389035  T
Q  239 gtctccaactttaaacttttttactttgcttcccacct 276  Q
    ||||||||| || ||||||| |||||||||||||||||    
T  13389034 gtctccaacattgaacttttctactttgcttcccacct 13388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 13385288 - 13385176
Alignment:
Q  164 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 263  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  264 ttgcttcccacct 276  Q
    |||||||||||||    
T  13385188 ttgcttcccacct 13385176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 13454143 - 13454252
Alignment:
Q  165 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 264  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  265 tgcttcccac 274  Q
    ||||||||||    
T  13454243 tgcttcccac 13454252  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  37 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 111  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  39 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 118  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 13393477 - 13393404
Alignment:
Q  203 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacct 276  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| ||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacct 13393404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  57 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 131  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  234 actttgtctccaactttaaacttttttactttgcttcccac 274  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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