View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1064_low_1 (Length: 538)
Name: NF1064_low_1
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Original strand, 4307516 - 4308044
Alignment:
| Q |
1 |
agactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctaaactcagaatcatccttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
4307516 |
agactctgcaattacttgttacacaagtaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctacactcagaatcatcctccc |
4307615 |
T |
|
| Q |
101 |
caactcacccaccatctctgatttgcttctattgacacagttgagatattaattttcttcacgctactctccagctcaacgcagttgtaatttaatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4307616 |
caactcacccaccatctctgatttgcttctattgacacagttgagataataattttcttcacgctactctccagctcaacgcagttgtaatttaatgctc |
4307715 |
T |
|
| Q |
201 |
gaaaagttaggttggtcgtttgtttgtttaattcaaaataaaggaatttattgcagacaatgttgagatgttgaacttacgggctaacgtttcagtcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4307716 |
gaaaagttaggttggtcgtttgtttgtttaattcaaaataaaggaatttattgcagacaatgttgagatgttgaacttacgggctaacgtttcagtcaca |
4307815 |
T |
|
| Q |
301 |
gttaggtttccaactgtgatatttccaacaccaacattgatgtatttctttcaaaaccactttgcgcgatatttatttagcaagttttttcttttgtcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4307816 |
gttaggtttccaactgtgatatttccaacaccaacattgatgtatttctttcaaaaccactttgcgcgatatttatttagcaagttttttcttttgtcat |
4307915 |
T |
|
| Q |
401 |
ggaatggtttgttgcagtaaaaaggagcataagagagaatgtaatcattgtgttgtattgaaaatggagaaacattactaaaattgagtataatccaact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4307916 |
ggaatggtttgttgcagtaaaaaggagcataagagagaatgtaatcattgtgttgtattgaaaatggagaaacattactaaaattgagtataatccaact |
4308015 |
T |
|
| Q |
501 |
actatttatgcatgtttgttgatattctt |
529 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
4308016 |
actatttatgcatgtttgttgattttctt |
4308044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27073353 - 27073291
Alignment:
| Q |
1 |
agactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaaca |
64 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||||| |
|
|
| T |
27073353 |
agactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaattacactttaaca |
27073291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27031564 - 27031614
Alignment:
| Q |
1 |
agactctgcaattacttgttacacaagcaattgtcttaagctaatatctaat |
52 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
27031564 |
agactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaat |
27031614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University