View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1064_low_10 (Length: 281)
Name: NF1064_low_10
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 12701785 - 12701550
Alignment:
| Q |
46 |
attcacctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttat |
145 |
Q |
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| T |
12701785 |
attcacctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttat |
12701686 |
T |
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| Q |
146 |
aaatgtgttatcgaaaaaactgcatcgacattgcatttcacctggccataattcggtttcacccaattgtgctcatgttgtatacttctaccactacgat |
245 |
Q |
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| T |
12701685 |
aaatgcgttatcgaaaaaactgcatcgacattgcatttcacctggccataattcggtttcacccaattgtgctcatgttgtatactactaccacaacgat |
12701586 |
T |
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| Q |
246 |
tatcatcaagcctgtttttcctcatatgaatgaatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12701585 |
tatcatcaagcctgtttttcctcatatgaatgaatt |
12701550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 281
Target Start/End: Complemental strand, 12762785 - 12762550
Alignment:
| Q |
46 |
attcacctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12762785 |
attcacctatcattgttgacattcatacacatttccaagttgtttttgtcatcgcaaagaatccattgatgtcacccgaacaacaagttggacttgttat |
12762686 |
T |
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| Q |
146 |
aaatgtgttatcgaaaaaactgcatcgacattgcatttcacctggccataattcggtttcacccaattgtgctcatgttgtatacttctaccactacgat |
245 |
Q |
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| T |
12762685 |
aaatgcgttatcgaaaaaactgcatcgacattgcatttcacctggccataattcggtttcacccaattgtgctcatgttgtatactactaccacaacgat |
12762586 |
T |
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| Q |
246 |
tatcatcaagcctgtttttcctcatatgaatgaatt |
281 |
Q |
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| T |
12762585 |
tatcatcaagcctgtttttcctcatatgaatgaatt |
12762550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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