View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1064_low_11 (Length: 278)

Name: NF1064_low_11
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1064_low_11
NF1064_low_11
[»] scaffold0356 (2 HSPs)
scaffold0356 (34-238)||(17090-17294)
scaffold0356 (185-238)||(16172-16225)
[»] scaffold0002 (3 HSPs)
scaffold0002 (34-238)||(320510-320714)
scaffold0002 (107-183)||(318943-319019)
scaffold0002 (185-238)||(318854-318907)
[»] chr3 (19 HSPs)
chr3 (44-187)||(10967988-10968131)
chr3 (44-187)||(33641-33784)
chr3 (34-183)||(10111458-10111607)
chr3 (34-183)||(10245143-10245292)
chr3 (43-183)||(10001274-10001414)
chr3 (34-183)||(27275254-27275403)
chr3 (34-183)||(52918886-52919035)
chr3 (44-181)||(11369508-11369645)
chr3 (51-179)||(46913356-46913484)
chr3 (41-90)||(13530904-13530953)
chr3 (185-232)||(52919071-52919118)
chr3 (192-238)||(27275446-27275492)
chr3 (185-238)||(11369683-11369736)
chr3 (191-238)||(10967904-10967951)
chr3 (185-238)||(10001450-10001503)
chr3 (185-238)||(10245328-10245381)
chr3 (185-238)||(10111643-10111696)
chr3 (190-238)||(33820-33868)
chr3 (185-238)||(46913524-46913576)
[»] chr6 (8 HSPs)
chr6 (34-183)||(15334156-15334305)
chr6 (34-183)||(12518134-12518283)
chr6 (45-177)||(30882176-30882308)
chr6 (43-183)||(18857404-18857544)
chr6 (43-183)||(2200108-2200248)
chr6 (186-238)||(30882351-30882403)
chr6 (190-238)||(15334345-15334393)
chr6 (191-238)||(2200019-2200066)
[»] chr8 (10 HSPs)
chr8 (44-187)||(25217771-25217914)
chr8 (44-187)||(25208253-25208396)
chr8 (34-187)||(7822691-7822844)
chr8 (45-183)||(21112956-21113094)
chr8 (44-187)||(30326345-30326478)
chr8 (190-238)||(7822880-7822928)
chr8 (190-238)||(25208169-25208217)
chr8 (190-238)||(25217687-25217735)
chr8 (190-238)||(30326514-30326562)
chr8 (194-238)||(21112867-21112911)
[»] chr7 (14 HSPs)
chr7 (44-187)||(12780354-12780497)
chr7 (44-187)||(12785208-12785351)
chr7 (34-183)||(21069284-21069433)
chr7 (34-183)||(9000355-9000504)
chr7 (34-183)||(42232858-42233007)
chr7 (44-187)||(7037590-7037733)
chr7 (51-179)||(18939294-18939422)
chr7 (34-182)||(22844643-22844791)
chr7 (186-238)||(22844829-22844881)
chr7 (185-238)||(9000266-9000319)
chr7 (190-238)||(12780270-12780318)
chr7 (190-238)||(12785124-12785172)
chr7 (190-238)||(7037769-7037817)
chr7 (192-238)||(42233050-42233096)
[»] chr4 (12 HSPs)
chr4 (44-187)||(35856777-35856920)
chr4 (44-187)||(13344805-13344948)
chr4 (44-187)||(49786058-49786201)
chr4 (44-183)||(49711040-49711179)
chr4 (44-183)||(55558335-55558474)
chr4 (47-181)||(5337164-5337298)
chr4 (185-238)||(49711215-49711268)
chr4 (190-238)||(35856956-35857004)
chr4 (190-238)||(49785974-49786022)
chr4 (185-238)||(14146672-14146725)
chr4 (192-238)||(55558246-55558292)
chr4 (190-238)||(13344984-13345032)
[»] chr5 (22 HSPs)
chr5 (45-182)||(14192023-14192160)
chr5 (44-183)||(27881954-27882093)
chr5 (44-186)||(37373806-37373946)
chr5 (34-183)||(10025836-10025985)
chr5 (43-183)||(25542013-25542153)
chr5 (44-187)||(8427791-8427934)
chr5 (44-183)||(30345841-30345980)
chr5 (44-182)||(17870869-17871007)
chr5 (44-183)||(3690847-3690986)
chr5 (44-183)||(3875801-3875940)
chr5 (45-180)||(39884046-39884181)
chr5 (34-183)||(24629172-24629321)
chr5 (186-238)||(17870779-17870831)
chr5 (185-238)||(3691022-3691075)
chr5 (185-238)||(3875712-3875765)
chr5 (190-238)||(8427707-8427755)
chr5 (190-237)||(27882133-27882180)
chr5 (192-238)||(10026028-10026074)
chr5 (192-238)||(24629083-24629129)
chr5 (185-238)||(14191933-14191986)
chr5 (190-238)||(37373983-37374031)
chr5 (192-238)||(30345752-30345798)
[»] scaffold0090 (2 HSPs)
scaffold0090 (44-187)||(48166-48309)
scaffold0090 (190-238)||(48082-48130)
[»] chr2 (20 HSPs)
chr2 (44-187)||(28665402-28665545)
chr2 (44-187)||(37824236-37824379)
chr2 (44-187)||(41919403-41919546)
chr2 (34-182)||(35610512-35610660)
chr2 (34-183)||(24268282-24268431)
chr2 (43-183)||(24246692-24246832)
chr2 (44-183)||(21396240-21396379)
chr2 (44-179)||(27510243-27510378)
chr2 (100-183)||(27193397-27193480)
chr2 (100-183)||(27843211-27843294)
chr2 (185-238)||(21396415-21396468)
chr2 (185-238)||(35610697-35610750)
chr2 (185-238)||(27510418-27510471)
chr2 (190-238)||(28665318-28665366)
chr2 (190-238)||(37824152-37824200)
chr2 (191-238)||(24246874-24246921)
chr2 (192-238)||(24268193-24268239)
chr2 (185-238)||(27193516-27193569)
chr2 (185-238)||(27843330-27843383)
chr2 (190-238)||(41919319-41919367)
[»] scaffold0073 (4 HSPs)
scaffold0073 (34-183)||(32792-32941)
scaffold0073 (44-187)||(621-764)
scaffold0073 (185-238)||(32977-33030)
scaffold0073 (190-238)||(800-848)
[»] scaffold0118 (2 HSPs)
scaffold0118 (34-183)||(27931-28080)
scaffold0118 (192-238)||(27842-27888)
[»] scaffold0107 (2 HSPs)
scaffold0107 (34-183)||(42835-42984)
scaffold0107 (185-238)||(43020-43073)
[»] scaffold0003 (2 HSPs)
scaffold0003 (44-183)||(183681-183820)
scaffold0003 (185-238)||(183856-183909)
[»] scaffold0134 (1 HSPs)
scaffold0134 (34-180)||(4475-4621)
[»] scaffold0017 (2 HSPs)
scaffold0017 (43-181)||(187411-187549)
scaffold0017 (185-238)||(187587-187639)
[»] scaffold1800 (2 HSPs)
scaffold1800 (34-183)||(1136-1285)
scaffold1800 (185-238)||(1047-1100)
[»] chr1 (10 HSPs)
chr1 (34-183)||(36208076-36208225)
chr1 (44-187)||(6310200-6310343)
chr1 (49-183)||(2330041-2330175)
chr1 (45-183)||(16042894-16043032)
chr1 (44-183)||(48774595-48774732)
chr1 (34-183)||(52501429-52501578)
chr1 (185-238)||(2330211-2330264)
chr1 (192-238)||(52501621-52501667)
chr1 (188-238)||(48774506-48774556)
chr1 (190-238)||(6310116-6310164)
[»] scaffold1139 (2 HSPs)
scaffold1139 (43-182)||(1886-2025)
scaffold1139 (185-238)||(2062-2115)
[»] scaffold0262 (2 HSPs)
scaffold0262 (44-183)||(19873-20012)
scaffold0262 (185-238)||(20047-20100)
[»] scaffold0225 (3 HSPs)
scaffold0225 (100-179)||(13512-13591)
scaffold0225 (191-238)||(13419-13466)
scaffold0225 (34-82)||(13592-13640)
[»] scaffold0029 (1 HSPs)
scaffold0029 (185-238)||(141387-141440)


Alignment Details
Target: scaffold0356 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 17294 - 17090
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17294 agaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcaacttgtgtcttttccagttcatctttgttg 17195  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgccgcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacag 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17194 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgccgcgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacag 17095  T
Q  234 gttct 238  Q
    |||||    
T  17094 gttct 17090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 16225 - 16172
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  16225 gcgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacataggttct 16172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 320714 - 320510
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  320714 agaaccaacggactccatgatcttgtcatacacacatctttcttcatcagtcatcatcagtaacatatcagcgtgtgtcttttccagttcatctttgttg 320615  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgccgcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacag 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||     
T  320614 taatttagctcatcaatgataagcttgtttgtgaaagttggcatgtctgttgcgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacaa 320515  T
Q  234 gttct 238  Q
    |||||    
T  320514 gttct 320510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 319019 - 318943
Alignment:
Q  107 tgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  319019 tgtgtcttttccagttcatcttcgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 318943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 318907 - 318854
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| |||| ||||||| ||||||||||| ||||||| ||||||| |||||||    
T  318907 gcgactgtccattttcctaaagcagcattttaatttcaatcaaacaaaggttct 318854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 10968131 - 10967988
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10968131 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagct 10968032  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  10968031 catcaatgataagcttgtttgtaaaagttggcatgtctgccgcg 10967988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 33641 - 33784
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  33641 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 33740  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| ||| |||||||||||||||||||||||||||||||||    
T  33741 catcaatgattagcttgtttgtgaaagttggcatgtctgccgcg 33784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 10111458 - 10111607
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10111458 agaaccaacggactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttg 10111557  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111558 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 10111607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 10245143 - 10245292
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10245143 agaaccaacggactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttg 10245242  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10245243 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 10245292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 10001274 - 10001414
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  10001274 ggactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccaattcatctttgttgtaatttagc 10001373  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10001374 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 10001414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 27275254 - 27275403
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||| || ||||||||| |||||| ||||||| ||| |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  27275254 agaaccaacggactccatgattttttcatgcacatatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttg 27275353  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27275354 taatttagctcatcaacaataagcttgtttgtgaaagttggcatgtctgc 27275403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 52918886 - 52919035
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||| ||||| | || |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  52918886 agaaccaacggactccatgatcttgtcttgcacgcttccttgttcatcagtcagcatcagtaacatatcagcatgtgtcttttccaattcatctttgttg 52918985  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  52918986 taatttagctcatcaatgataatcttgtttgtgaatgttggcatgtctgc 52919035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 11369508 - 11369645
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  11369508 gactccatgatcttgtcatgcacacatctttgttcatcagctatcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagct 11369607  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtct 181  Q
    |||||||||||| ||| ||| |||| ||||||||||||    
T  11369608 catcaacgataatcttttttttgaacgttggcatgtct 11369645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 46913356 - 46913484
Alignment:
Q  51 tgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctcatcaac 150  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||| ||    
T  46913356 tgatcttgtcatgcacacatctctgttcatcagtcagcatcagtaacatatcagcacgtgtctttgccagttcatccttgttgtaatttagctcatcgac 46913455  T
Q  151 gataagcttgtttgtgaaagttggcatgt 179  Q
    |||||||||||||||||| ||||||||||    
T  46913456 gataagcttgtttgtgaaggttggcatgt 46913484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 13530904 - 13530953
Alignment:
Q  41 aaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacat 90  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13530904 aaggactccatgaacttgtcatgcacacatctttgttcatcagtcaacat 13530953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 52919071 - 52919118
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacaca 232  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  52919071 gcgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacaca 52919118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 27275446 - 27275492
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27275446 tccgttttcctgaagcagcatttcaatttcattcaaacaaaggttct 27275492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 11369683 - 11369736
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  11369683 gcgaccgtccattttcctgaagcagcatttcaatttcaatcaaacacatgttct 11369736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 10967951 - 10967904
Alignment:
Q  191 gtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  10967951 gtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 10967904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 10001450 - 10001503
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||    
T  10001450 gcgactgttcgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 10001503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 10245328 - 10245381
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||    
T  10245328 gcgactgttcgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 10245381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 10111643 - 10111696
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| || ||||||||||||||| ||||||||||||| ||||||| |||||||    
T  10111643 gcgactgttcgttttcctgaagcaacatttcaatttcaatcaaacaaaggttct 10111696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 33820 - 33868
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||| ||||||||||||||| |||||||||||| ||||||||| |||||    
T  33820 cgtcggttttcctgaagcagtatttcaatttcaatcaaacacatgttct 33868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 46913524 - 46913576
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||| ||||||||||||||||||| |||||||||||||  |||||||| |||||    
T  46913524 gcgaacgtccgttttcctgaagca-catttcaatttcaaacaaacacaagttct 46913576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 15334156 - 15334305
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15334156 agaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcatctttgttg 15334255  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15334256 taacttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 15334305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 12518134 - 12518283
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  12518134 agaaccaacggactccatgatcttgtcatgcacgcatctttgttcatcagtcaacatcagtaacatatcaacgtgtgtcttttccagctcatctttgttg 12518233  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12518234 taacttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 12518283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 30882176 - 30882308
Alignment:
Q  45 actccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctc 144  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30882176 actccatgatcttgtcatgcacacatctttgttcatcagtcagcattagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctc 30882275  T
Q  145 atcaacgataagcttgtttgtgaaagttggcat 177  Q
    |||||||||||||||||||||||||||| ||||    
T  30882276 atcaacgataagcttgtttgtgaaagttagcat 30882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 18857404 - 18857544
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  18857404 ggactccatgatcttgtcatgcacacatctttgttcatccgtcagcatcagtaacatatcagcgtgtgccttttccagttcatctttgttgtaatttaga 18857503  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  18857504 tcatcaacgataagcttgtttttgaaatttggcatgtctgc 18857544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 2200248 - 2200108
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  2200248 ggactccatgatcttgtcgtgcacacatctttgttcatcagtcaacatctgtaacatatcagtgtatgtcttttccagttcatctttgttgtaatttagc 2200149  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||| ||||||||| ||||||||||||||||||| ||||||    
T  2200148 tcataaacgataagtttgtttgtgaaagttggcacgtctgc 2200108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 30882351 - 30882403
Alignment:
Q  186 cgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30882351 cgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacaggttct 30882403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 15334345 - 15334393
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  15334345 cgtccattttcctgaagcagcatttcaatttcaatcaaacaaaggttct 15334393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2200066 - 2200019
Alignment:
Q  191 gtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  2200066 gtccgttttcctgaagcaacatttcaatttcaatcaaacacatgttct 2200019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 25217914 - 25217771
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  25217914 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 25217815  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  25217814 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 25217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 25208396 - 25208253
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  25208396 gactccatgatcttgtcatgcacacatctttgttcatcagtcaatatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 25208297  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  25208296 catcaatgataagcttgtttgtgaaagttggcatgtctaccgcg 25208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 7822691 - 7822844
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||    
T  7822691 agaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcggcgtgtgtcttttccagttcaactttgttg 7822790  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  7822791 taatttagctcatcaatgataagcttgtttgtgaaagttggcatgtcttccgcg 7822844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 21113094 - 21112956
Alignment:
Q  45 actccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctc 144  Q
    ||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  21113094 actccatgatcttttcatgcaaatatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagctc 21112995  T
Q  145 atcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21112994 atcaacgataagcttgtttgtgaaagttggcatgtctgc 21112956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 30326345 - 30326478
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||| |||||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  30326345 gactccataatcttgtcatgcacacatctttgttcatc----------agtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 30326434  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||| ||||||||||||||    
T  30326435 catcaatgataagcttgtttgtgaaagttagcatgtctgccgcg 30326478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 7822880 - 7822928
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7822880 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 7822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 25208217 - 25208169
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25208217 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 25208169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 25217735 - 25217687
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  25217735 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 25217687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 30326514 - 30326562
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30326514 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 30326562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 21112911 - 21112867
Alignment:
Q  194 cgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||    
T  21112911 cgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 21112867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 12780497 - 12780354
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  12780497 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 12780398  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  12780397 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 12780354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 12785351 - 12785208
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  12785351 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagct 12785252  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  12785251 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 12785208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 21069433 - 21069284
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  21069433 agaaccaacggactccatgatcttttcatgcacacatctttgttcatcaatcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttg 21069334  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21069333 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 21069284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 9000504 - 9000355
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  9000504 agaaccaacggactccattatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttg 9000405  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  9000404 taacttagctcatcaacgataatcttgtttgtgaaagttggcatgtctgc 9000355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 42232858 - 42233007
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||||| || ||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  42232858 agaaccaacggactccatgatcttttcatgcacatatatttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttg 42232957  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42232958 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 42233007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 7037590 - 7037733
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||    
T  7037590 gactccatgatcttgtcatgcacacatctttgttcatctgtcagcatcagtaacatatcagcgtgtgtcttttccaattcaactttgctgtaatttagct 7037689  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| ||||||  |||||||||||||||||||||||||||||    
T  7037690 catcaatgataagtctgtttgtgaaagttggcatgtctgccgcg 7037733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 18939294 - 18939422
Alignment:
Q  51 tgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctcatcaac 150  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| ||    
T  18939294 tgatcttgtcatgcacgcatctttgttcatcagtcaacatcagtaacatatcagcgcgtgtcttttccagttcatccttgttgtaatttagctcatcgac 18939393  T
Q  151 gataagcttgtttgtgaaagttggcatgt 179  Q
    |||||||||||||||||| ||||||||||    
T  18939394 gataagcttgtttgtgaaggttggcatgt 18939422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 22844643 - 22844791
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||| | ||| ||| |||||||||||||| |||||||||| ||||||||||||||||    
T  22844643 agaaccaacggactccatgatcttgtcatacacacatctttgttcattaatcagcattagtaacatatcagcgtgtgtctttttcagttcatctttgttg 22844742  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctg 182  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  22844743 taatttagctcatcaatgataagcttgtttgtgaaagttagcatatctg 22844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 22844829 - 22844881
Alignment:
Q  186 cgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22844829 cgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacaggttct 22844881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 9000319 - 9000266
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  9000319 gcgaccgtccgttttcctgaagcaacatttcaatttcaatcaaacacaggttct 9000266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 12780318 - 12780270
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12780318 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 12780270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 12785172 - 12785124
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12785172 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 12785124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 7037769 - 7037817
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  7037769 cgtccgttttcctgaagcaacatttcaatttcaatcaaacacatgttct 7037817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 42233050 - 42233096
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  42233050 tccgttttcctgaagcaacatttcaatttcagtcaaacaaaggttct 42233096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 35856777 - 35856920
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35856777 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 35856876  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  35856877 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 35856920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 13344805 - 13344948
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  13344805 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 13344904  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||    
T  13344905 catcaatgataagcttgtttgtgaaagttagcatgtctgtcgcg 13344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 49786201 - 49786058
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  49786201 gactccatgatcttgtcatgcacacatctttgttcatcagttagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagct 49786102  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  49786101 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 49786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 49711040 - 49711179
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||    
T  49711040 gactccattatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttcccagttcatctttgttgtaactcagct 49711139  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49711140 catcaacgataagcttgtttgtgaaagttggcatgtctgc 49711179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 55558474 - 55558335
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||| ||||||||| || ||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  55558474 gactccatgatcttttcatgcacatatatttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagct 55558375  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55558374 catcaacgataagcttgtttgtgaaagttggcatgtctgc 55558335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 5337164 - 5337298
Alignment:
Q  47 tccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctcat 146  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||  ||||||||| |||||||||||||||||||    
T  5337164 tccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagtctgtgtctttgtcagttcatccttgttgtaatttagctcat 5337263  T
Q  147 caacgataagcttgtttgtgaaagttggcatgtct 181  Q
    | || ||||||||||||||||| ||||||||||||    
T  5337264 ccacaataagcttgtttgtgaaggttggcatgtct 5337298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 49711215 - 49711268
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  49711215 gcgaccgtccgttttcctgaagcaacatttcaatttcaatcaaacacaggttct 49711268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 35856956 - 35857004
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  35856956 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 35857004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 49786022 - 49785974
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  49786022 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 49785974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 14146725 - 14146672
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| |||||  |||||||||||||||||||| |||||||||||||||    
T  14146725 gcgaccgtccattttctagaagcagcatttcaatttcaatcaaacacaggttct 14146672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 55558292 - 55558246
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  55558292 tccgttttcctgaagcaacatttcaatttcagtcaaacaaaggttct 55558246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 13344984 - 13345032
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||| |||||  |||||| ||||||||| |||||    
T  13344984 cgtccgttttcctgaagcaacatttatatttcaatcaaacacatgttct 13345032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 14192160 - 14192023
Alignment:
Q  45 actccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctc 144  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14192160 actccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtagcatatcagcgtgtgtcttttccagttcatctttgttgtaatttagctc 14192061  T
Q  145 atcaacgataagcttgtttgtgaaagttggcatgtctg 182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14192060 atcaacgataagcttgtttgtgaaagttggcatgtctg 14192023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 27881954 - 27882093
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  27881954 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcaactttgttgtaatttagct 27882053  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  27882054 catcaatgataagcttgtttgttaaagttggcatgtctgc 27882093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 37373806 - 37373946
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  37373806 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagc--gtgtcttttccagttcaactttgttgtaatttagct 37373903  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgc 186  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  37373904 catcaatgataagcttgtttgtgaaagttggcatgtctgccgc 37373946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 10025836 - 10025985
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  10025836 agaaccaacggactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttg 10025935  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10025936 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 10025985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 25542153 - 25542013
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    |||||||| |||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25542153 ggactccaggatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttccagttcatctttgttgtaatttagc 25542054  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25542053 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 25542013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 8427934 - 8427791
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| || |||| ||||||||||||||||||    
T  8427934 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtctttttcaattcaactttgttgtaatttagct 8427835  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  8427834 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 8427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 30345980 - 30345841
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  30345980 gactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttgtaatttagct 30345881  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30345880 catcaacgataagcttgtttgtgaaagttggcatgtctgc 30345841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 182
Target Start/End: Complemental strand, 17871007 - 17870869
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  17871007 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacattagtaacatatcagcgtgtgtccttttcagttcatctttgttgtaatttagct 17870908  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctg 182  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  17870907 catcaacgataagcttgtttgtgaaagttagcatatctg 17870869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 3690847 - 3690986
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  3690847 gactccatgatcttgtcatgcacacatctttgttcatcatccagcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagct 3690946  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  3690947 catcaacgataagcttgtttgtgaacgttggcatgtctgc 3690986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 3875940 - 3875801
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  3875940 gactccatgatcttgtcatgcacacatctttgttcatcatccagcatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagct 3875841  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  3875840 catcaacgataagcttgtttgtgaacgttggcatgtctgc 3875801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 39884046 - 39884181
Alignment:
Q  45 actccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctc 144  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  39884046 actccatgatcttgtcaagcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccagttcatcttagttgtaacttagctc 39884145  T
Q  145 atcaacgataagcttgtttgtgaaagttggcatgtc 180  Q
    ||||||||||||||| ||||||||||||||||||||    
T  39884146 atcaacgataagcttatttgtgaaagttggcatgtc 39884181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 24629321 - 24629172
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||| || ||||||||| |||||| ||||||| ||| |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  24629321 agaaccaacggactccatgattttttcatgcacatatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttg 24629222  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24629221 taatttagctcatcaacaataagcttgtttgtgaaagttggcatgtctgc 24629172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 17870831 - 17870779
Alignment:
Q  186 cgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17870831 cgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacaggttct 17870779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 3691022 - 3691075
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  3691022 gcgaccgtccattttcctgaagcagcatttcaatttcaatcaaacacatgttct 3691075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 3875765 - 3875712
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  3875765 gcgaccgtccattttcctgaagcagcatttcaatttcaatcaaacacatgttct 3875712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 8427755 - 8427707
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  8427755 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 8427707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 27882133 - 27882180
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttc 237  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  27882133 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttc 27882180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 10026028 - 10026074
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  10026028 tccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 10026074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 24629129 - 24629083
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24629129 tccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 24629083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 14191986 - 14191933
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  14191986 gcgatcgtccgttttcctgaagcaacatttcaatttcaatcaaacacatgttct 14191933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 37373983 - 37374031
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  37373983 cgtccattttcctgaagctgcatttcaatttcaatcaaacacatgttct 37374031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 30345798 - 30345752
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||| || ||||||||||||| ||||||| |||||||    
T  30345798 tccgttttcctgaaacaacatttcaatttcaatcaaacaaaggttct 30345752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 48309 - 48166
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  48309 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagct 48210  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  48209 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 48166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 48130 - 48082
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  48130 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 48082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 28665545 - 28665402
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  28665545 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagct 28665446  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  28665445 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 28665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 37824379 - 37824236
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  37824379 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtcttttccagttcaactttgttgtaatttagct 37824280  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37824279 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 37824236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 41919546 - 41919403
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  41919546 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcaacatgtgtcttttccagttcaactttgttgtaatttagct 41919447  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  41919446 catcaatgataagcttgtttgtgaaagttggcatgtctgccgcg 41919403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 35610512 - 35610660
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||    
T  35610512 agaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtagcatatcagcgtgtgtcttttccatttcatctttgttg 35610611  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctg 182  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35610612 taatttagctcatcaacgataagtttgtttgtgaaagttggcatgtctg 35610660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 24268431 - 24268282
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  24268431 agaaccaacggactccatgatcttttcatgcaaatatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttacagttcatctttgttg 24268332  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24268331 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 24268282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 24246692 - 24246832
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  24246692 ggactccatgatcttgtcatgcacacatatttgttcatcaatcagcatcagtaacatatcagcgtgtgtcttttacagttcatctttgttgtaatttagc 24246791  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  24246792 tcatcaacaataagcttgtttgtgaaagttggcatgtctgc 24246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 21396240 - 21396379
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| | ||||    
T  21396240 gactccattatcttgtcatgcacacatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtctttttcagttcatctttgttgtaactcagct 21396339  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21396340 catcaacgataagcttgtttgtgaaagttggcatgtctgc 21396379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 27510243 - 27510378
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |    
T  27510243 gactccatgatcttgtcatgcacgcatctttgttcatcagtcagcatcagtaacatatcagcgtgtgtcttttccaattcatctttgttgtaatttagat 27510342  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgt 179  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27510343 catcatcgataagcttgtttgtgaaagttggcatgt 27510378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 27193397 - 27193480
Alignment:
Q  100 atcagcttgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27193397 atcagcgtgtgtcttttccagttaatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 27193480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 27843211 - 27843294
Alignment:
Q  100 atcagcttgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27843211 atcagcgtgtgtcttttccagttaatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 27843294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 21396415 - 21396468
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  21396415 gcgaccgtccgttttcctgaagcaacatttcaatttcaatcaaacacaggttct 21396468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 35610697 - 35610750
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35610697 gcgatcgtccgttttcctgaagcagcatttcaatttcaatcaaacacaggttct 35610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 27510418 - 27510471
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||| ||||    
T  27510418 gcgaccgcccgttttcctgaagcagcatttcaatttcaatcaaacacagattct 27510471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 28665366 - 28665318
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28665366 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 28665318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 37824200 - 37824152
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37824200 cgtccgttttcctgaagcagcatttcaatttcaatcaaacacatgttct 37824152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 24246874 - 24246921
Alignment:
Q  191 gtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24246874 gtccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 24246921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 24268239 - 24268193
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24268239 tccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 24268193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 27193516 - 27193569
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||    
T  27193516 gcgaccgtccattttcctgaagtagcatttcaatttcaatcaaacacagcttct 27193569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 27843330 - 27843383
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||    
T  27843330 gcgaccgtccattttcctgaagtagcatttcaatttcaatcaaacacagcttct 27843383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 41919367 - 41919319
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  41919367 cgtccgttttcttgaagcagcatttcaatttcaatcaaacacatgttct 41919319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 32792 - 32941
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  32792 agaaccaacggactccatgatcttgtcatgcacacatctttgttcatcagtgagcatcagtaacatatcagcgtgtgtcttttccagttcatctttgttg 32891  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  32892 taaattagctcataaacgataagcttgtttgtgaaagttggcatgtctgc 32941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 621 - 764
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||    
T  621 gactccatgatcttgtcatgcacacatctttgttcatctgtcagcatcagtaacatatcagcgtgtgtcttttccaattcaactttgctgtaatttagct 720  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| |||||| ||||||||||||||||||||||||||||||    
T  721 catcaatgataagtttgtttgtgaaagttggcatgtctgccgcg 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 32977 - 33030
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  32977 gcgaccgtccgttttcctgaagcaacatttcaatttcaatcaaacacaggttct 33030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 800 - 848
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  800 cgtccgttttcctgaagcaacatttcaatttcaatcaaacacatgttct 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 28080 - 27931
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  28080 agaaccaacggactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatatcagcatgtgtcttttacagttcatctttgttg 27981  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27980 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 27931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 27888 - 27842
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  27888 tccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 27842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 42835 - 42984
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||    
T  42835 agaaccaacggactccattatcttgtcatgcacacatctttgttcattagtcagcatcagtaacatatcagcgtgtgtcttttccagttcatctttgctg 42934  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42935 taacttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 42984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 43020 - 43073
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||| |||||||| ||||| ||||||||||||| ||||||| |||||||    
T  43020 gcgaccgtcagttttcctaaagcaacatttcaatttcaatcaaacataggttct 43073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 183681 - 183820
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  183681 gactccatgatcttgtcatgcacacatctttgttcatcaaccaacatcagtaacatatcagcgtgtgtcttttcccgtttatctttgttgtaatttagct 183780  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  183781 catcaacgataagcttgtttgtgaacgttggcatgtctgc 183820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 183856 - 183909
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||    
T  183856 gcgaccgtccattttcctgaagcagcatttcaatttcaatcaaacacatgttct 183909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 4621 - 4475
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4621 agaaccaacggactacatgatcttttcatgcacatatctttgttcatcaatcaacatcagtaacatatcagcatgtgtcttttccagttcatctttgttg 4522  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtc 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4521 taatttagctcatcaacaataagcttgtttgtgaaagttggcatgtc 4475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 187411 - 187549
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  187411 ggactccatgatcttttcatgcacatatctttgttcatcaatcagcattagtaacatatcagcgtgtgtcttttccagttcatctttgttgtaatttagc 187510  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtct 181  Q
    |||||||||||||||||||||||||||||||||||||||    
T  187511 tcatcaacgataagcttgtttgtgaaagttggcatgtct 187549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 187587 - 187639
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  187587 gcgactgtccgttttcctgaagcagcattt-aatttcaatcaaacaaaggttct 187639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1800 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: scaffold1800
Description:

Target: scaffold1800; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 1285 - 1136
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||||||| ||| ||| | |||||||||||| |||||||||||||||||||||||||||    
T  1285 agaagcaacagactccatgatcttgccatgcacacatctttgttcatcattcagcataactaacatatcagcgtgtgtcttttccagttcatctttgttg 1186  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1185 taatttagctcatcaacgataagcttgtttgtgaaagttgacatgtctgc 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1800; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1100 - 1047
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  1100 gcgaccgtccgttttcctgaagcatcatttcaatttcaatcaaacacaggttct 1047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 36208076 - 36208225
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||  |||||||||||||||||| ||||||||    
T  36208076 agaaccaacggactccatgatcttgtcatgcacacatctttgctcattagtcagcatcagtaacatatcagtgtgtgtcttttccagttcacctttgttg 36208175  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36208176 taatttagctcatcaacgataaacttgtttgtgaaagttggcatgtctgc 36208225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 6310343 - 6310200
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| |||||||| |||||||||    
T  6310343 gactccatgatcttgtcatgcacacatctttgttcatcagtcagcatcagtaatatatcagcgtgtgtcttttccagttcaactttgttgaaatttagct 6310244  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgccgcg 187  Q
    |||||| ||||||  |||||||||||||||||||||||||||||    
T  6310243 catcaatgataagtctgtttgtgaaagttggcatgtctgccgcg 6310200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 2330041 - 2330175
Alignment:
Q  49 catgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctcatca 148  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  2330041 catgttcttgtcatgcacacatctttgttaatcagtcaacatcagtaacatatcagcgtgagtcttttccagttcatcttcgttgtaatttagctcatca 2330140  T
Q  149 acgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||| ||||||||||||    
T  2330141 acgataagcttgtttgtgaaagatggcatgtctgc 2330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 16042894 - 16043032
Alignment:
Q  45 actccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagctc 144  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||| ||||||| |||||||    
T  16042894 actccatgatcttgtcaagcacacatctttgttcatcagtcagcatcagtaacatatcaacgtgtgtctttttcagttcatcttagttgtaacttagctc 16042993  T
Q  145 atcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16042994 atcaacgataagcttgtttgtgaaagttggcatgtctgc 16043032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 48774732 - 48774595
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||    
T  48774732 gactccatgatcttgtcatgcacacttctttgttcatcagccagcatcagtaacatatcag--tgtgtcttttcccgtttatctttgttgtaatttagct 48774635  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  48774634 catcaacgataagcttgtttgtgaacgttggcatgtctgc 48774595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 52501429 - 52501578
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttg 133  Q
    |||| ||| |||||||||||| || ||||||||| |||||| ||||||| ||| |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  52501429 agaaccaacggactccatgattttttcatgcacatatctttattcatcaatcagcatcagtaacgtatcagcatgtgtcttttacagttcatctttgttg 52501528  T
Q  134 taatttagctcatcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52501529 taatttagctcatcaacaataagcttgtttgtgaaagttggcatgtctgc 52501578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 2330211 - 2330264
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  2330211 gcgaccgtccgttttcctgaagcagcatttcaatttcaatcaaacacagattct 2330264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 52501621 - 52501667
Alignment:
Q  192 tccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  52501621 tccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 52501667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 48774556 - 48774506
Alignment:
Q  188 accgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||| |||||    
T  48774556 accgtccattttcctgaagcagcgtttcaatttcaatcaaacacatgttct 48774506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 6310164 - 6310116
Alignment:
Q  190 cgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||| |||||    
T  6310164 cgtccgttttcttgaagcaacatttcaatttcaatcaaacacatgttct 6310116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 1886 - 2025
Alignment:
Q  43 ggactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagc 142  Q
    |||||||||||| |||||||||||| |||||| ||||| ||||| ||| |||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  1886 ggactccatgatattgtcatgcacatatcttttttcattagtcagcattagtaacatatcagtgtgtgtcttttccagttcatctttgttgtaatttagc 1985  T
Q  143 tcatcaacgataagcttgtttgtgaaagttggcatgtctg 182  Q
    ||| |||||||||||| |||||||||||||||||||||||    
T  1986 tcaacaacgataagctcgtttgtgaaagttggcatgtctg 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 2062 - 2115
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||| |||||||||||||| ||||||||| |||||||| ||||||||| |||||    
T  2062 gcgatcgtccgttttcctggagcagcattccaatttcaatcaaacacaagttct 2115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 19873 - 20012
Alignment:
Q  44 gactccatgatcttgtcatgcacacatctttgttcatcagtcaacatcagtaacatatcagcttgtgtcttttccagttcatctttgttgtaatttagct 143  Q
    |||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||| ||  |||||| ||| ||||||||||||||||||||||||||    
T  19873 gactccatgatcttttcatgcacatatctttgttcatcaatcagcatcagtaacatataagaatgtgtcatttacagttcatctttgttgtaatttagct 19972  T
Q  144 catcaacgataagcttgtttgtgaaagttggcatgtctgc 183  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  19973 catcaacgataagcttgtttatgaaagttggcatgtctgc 20012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 20047 - 20100
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  20047 gcgactgtctgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 20100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 13591 - 13512
Alignment:
Q  100 atcagcttgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgt 179  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13591 atcagcatgtgtcttttccagttcatctttgttgtaatttagctcatcaacgataagcttgtttgtgaaagttggcatgt 13512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 13466 - 13419
Alignment:
Q  191 gtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  13466 gtccgttttcctgaagcagcatttcaatttcaatcaaacaaaggttct 13419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 13640 - 13592
Alignment:
Q  34 agaagcaaaggactccatgatcttgtcatgcacacatctttgttcatca 82  Q
    |||| ||| ||||||||||||||| ||||||||| ||||||||||||||    
T  13640 agaaccaatggactccatgatcttttcatgcacatatctttgttcatca 13592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 141440 - 141387
Alignment:
Q  185 gcgaccgtccgttttcctgaagcagcatttcaatttcattcaaacacaggttct 238  Q
    ||||| |||| ||||||| ||||||||||| ||||||| ||||||| |||||||    
T  141440 gcgactgtccattttcctaaagcagcattttaatttcaatcaaacaaaggttct 141387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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