View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1064_low_14 (Length: 251)
Name: NF1064_low_14
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4845193 - 4844979
Alignment:
| Q |
1 |
cgattaatgactgttgaatattttgcatgaagcatgacttgaaagcttgacctggcggtatatatatatcaagaacatcatgttttcgtgcccacacgtg |
100 |
Q |
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| T |
4845193 |
cgattaatgactgttgaatattttgcatgaagcatgacttgaaagcatgacatagtggtatatatat--caagaacatcatgttttcgtgcccacacgtg |
4845096 |
T |
|
| Q |
101 |
ggaagctagtatatcttggcctatacatacccattaacaacaaaagtagatcaacaactaaatcatcctcccaagagaataaatctcgacgcaaacacag |
200 |
Q |
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| T |
4845095 |
ggaagctagtatatcttggcctatacatacccattaacaacaaaagtagatcaacaactaaatcatcctccaaagagaataaatttcgacgtaaacacag |
4844996 |
T |
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| Q |
201 |
cctccaagaatgactat |
217 |
Q |
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||||||||||||||||| |
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| T |
4844995 |
cctccaagaatgactat |
4844979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 4799909 - 4799710
Alignment:
| Q |
2 |
gattaatgactgttgaatattttgcatgaagcatgacttgaaagcttgacctggcggtatatatatatcaagaacatcatgttttcgtgcccacacgtgg |
101 |
Q |
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|||| ||||||| ||||||| |||||||||||| ||||||||||| |||||||| |||||| ||||||||||| |||| | ||||||| ||| |
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| T |
4799909 |
gattcatgactgctgaatatcttgcatgaagcacaacttgaaagctggacctggcagtatatccgg--caagaacatcaagtttccatgcccacttgtgt |
4799812 |
T |
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| Q |
102 |
gaagctagtatatcttggcctatacatacccattaacaacaaaagtagatcaacaactaaatcatcctcccaagagaataaatctcgacgcaaacacagc |
201 |
Q |
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||||||||||| |||||| ||||| | || |||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||| |||| |
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| T |
4799811 |
gaagctagtatgccttggcttatac----caatcaacaacaaaagtagatcaacaactaaatcatcctcccaagcgaatatatttcgaggcaaatgcagc |
4799716 |
T |
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