View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1064_low_9 (Length: 284)
Name: NF1064_low_9
Description: NF1064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1064_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 32592586 - 32592312
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
32592586 |
ttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaattagactcagcc |
32592487 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
32592486 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgcatagcaataattttcg |
32592387 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
|||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32592386 |
tctccgcgttaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
32592312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 51824757 - 51825024
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
51824757 |
ttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtccaagccgctttcttcatcgccaactcagagttagcctcag-- |
51824854 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51824855 |
-------cctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgttactctctccagccctctgcatcgcaataactttcg |
51824947 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatctca |
277 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
51824948 |
tctctgcgtcaatttttgctgcattctgcagtgtttgtccttccctagatttcgaaccaacttcacctttcatctca |
51825024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 26 - 275
Target Start/End: Original strand, 37030763 - 37031012
Alignment:
| Q |
26 |
gcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaa |
125 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
37030763 |
gcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaa |
37030862 |
T |
|
| Q |
126 |
aaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcgtctctgcatcaattttcgctgcatt |
225 |
Q |
| |
|
|||| |||||||||||||| ||| ||| ||||||||| |||| |||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37030863 |
aaactttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgcattgcaataaccttcgtctctgcatcaattttcgctgcatt |
37030962 |
T |
|
| Q |
226 |
ctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
37030963 |
ctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
37031012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 88 - 275
Target Start/End: Original strand, 31527432 - 31527619
Alignment:
| Q |
88 |
attagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31527432 |
attagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctccagccctctgcata |
31527531 |
T |
|
| Q |
188 |
gcaataactttcgtctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527532 |
gcaataattttcgtctccgcgtcaatttttgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
31527619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31527380 - 31527412
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgac |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
31527380 |
ttcccttagagccacagctttagcagcctcgac |
31527412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 49188227 - 49188501
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||| |||||| | |||| |
|
|
| T |
49188227 |
ttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagcc |
49188326 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||| |||||| || ||||||||||||||||| |||| |
|
|
| T |
49188327 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctcactttaattccctccttctcaccctctccagctctctgcatcgcaataaccttcg |
49188426 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
49188427 |
tctctgcatcaatttttgctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
49188501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 2 - 275
Target Start/End: Original strand, 49191964 - 49192237
Alignment:
| Q |
2 |
tcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcca |
101 |
Q |
| |
|
||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
49191964 |
tcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagcca |
49192063 |
T |
|
| Q |
102 |
cttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcgt |
201 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| |||||||||||| | |||||| ||||||||||||||||||| || || |
|
|
| T |
49192064 |
cttcagcttctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgtcgccctctccagccctctgcatcgcaataatctttgt |
49192163 |
T |
|
| Q |
202 |
ctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||| |||| || |||| ||||||||||||| |
|
|
| T |
49192164 |
ctctgcatcaatttttgctgcattttgtagtgtttgtccttccctcaatttcgaaccaatctcacctttcatct |
49192237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 49208240 - 49208514
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||| | |||||||||||||| ||| | |||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
49208240 |
ttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactcggaattagcctcagcc |
49208339 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||||| || |||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
49208340 |
acttcagcctctctttgattctcaaaaactttcacttcagtcctcactttaattccctgtttctcaccttctccagccctctgcatcgcaataaccttcg |
49208439 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
49208440 |
tctctgcatcaattttcgctgcgttctggatcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
49208514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 49203094 - 49203310
Alignment:
| Q |
26 |
gcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagccacttcagcctctctttgattctcaa |
125 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| || |||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
49203094 |
gcctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaa |
49203193 |
T |
|
| Q |
126 |
aaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcgtctctgcatcaattttcgctgcatt |
225 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
49203194 |
aaaccttcacttcagtcctcactttaattccctccttgtcaccctatccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcatt |
49203293 |
T |
|
| Q |
226 |
ctgcagtgtttgtcctt |
242 |
Q |
| |
|
|||||| |||| ||||| |
|
|
| T |
49203294 |
ctgcagcgtttttcctt |
49203310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 49213080 - 49213354
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||| || ||||| || |||||||| | ||||||||||||| |
|
|
| T |
49213080 |
ttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactccgaattagcctcagcc |
49213179 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| || ||| ||| ||||| ||| ||||| ||||| ||||| |||||||| ||||| |||| |
|
|
| T |
49213180 |
acttcagcctctctctgattctcaaatactttcacttcagttctcactttaattccctgcttctcactttctcctgccctttgcatcgctataaccttcg |
49213279 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |||| |||| || |||| |||||||||||||| |
|
|
| T |
49213280 |
tctctgcatcaatttttgctgcattctgcagcgtttgtcctaccctcaatttcgaaccaatttcacctttcatct |
49213354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 26756606 - 26756880
Alignment:
| Q |
1 |
ttcccttagagccacagctttagcggcctcgacttcagccacttgagcggccttagtccaagccgctttcttcttcgccaactcagcattagcctcagcc |
100 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| | |||||| | ||||||||| ||| |
|
|
| T |
26756606 |
ttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactcggaattagcctcggcc |
26756705 |
T |
|
| Q |
101 |
acttcagcctctctttgattctcaaaaaccttcacttcagtcctgactctaaatccctccttgtcactctctccggccctctgcatcgcaataactttcg |
200 |
Q |
| |
|
|| ||||||||||| | ||||||||||||||||||||||||||| ||| ||| | | ||||| ||| |||||| ||||||||| ||||||| ||||||| |
|
|
| T |
26756706 |
acctcagcctctctcttattctcaaaaaccttcacttcagtcctaactttaatttcttccttctcagcctctccagccctctgcgtcgcaatgactttcg |
26756805 |
T |
|
| Q |
201 |
tctctgcatcaattttcgctgcattctgcagtgtttgtccttccctagattttgagccaacttcacctttcatct |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||||| |
|
|
| T |
26756806 |
tctctgcatcaattttcgctgcattctgcagcgtttgtcctttcctcgatttcgatccaacttcacctttcatct |
26756880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University