View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_high_1 (Length: 315)
Name: NF10651_high_1
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 90 - 300
Target Start/End: Complemental strand, 52243682 - 52243472
Alignment:
| Q |
90 |
gaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaa |
189 |
Q |
| |
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|||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52243682 |
gaaacttagtctctcaaatacaagaggtgtcagagaagagctaagaaaagtatatgttacatcagcttaccaacaagaaattaaacattatagccacaaa |
52243583 |
T |
|
| Q |
190 |
ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat |
289 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52243582 |
ggagcacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaat |
52243483 |
T |
|
| Q |
290 |
taggatgattt |
300 |
Q |
| |
|
||||||||||| |
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|
| T |
52243482 |
taggatgattt |
52243472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 24598855 - 24598983
Alignment:
| Q |
84 |
taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagc |
183 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||| | |||| ||||||||| ||| | ||||||| |||||||||| |||||||||| ||||| ||| |
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| T |
24598855 |
taaccagaaacttagtctctcaaacacaagatgtgaaaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaattaagcattacagc |
24598954 |
T |
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| Q |
184 |
cacaaaggagcacgctaaaacacacaaaaa |
213 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |
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|
| T |
24598955 |
cacaaaaaggcacgctaaaa-acacaaaaa |
24598983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 95 - 300
Target Start/End: Original strand, 53146837 - 53147037
Alignment:
| Q |
95 |
ttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccacaaaggag- |
193 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| |||| ||| | |||||||| || |
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| T |
53146837 |
ttagtctctcaagcacgagaggtgccagagaaaagctaagaaaagta----ttagatctggttacctgcaagaaa-taaatgttacaaccacaaagcaga |
53146931 |
T |
|
| Q |
194 |
cacgctaaaacacacaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattagg |
293 |
Q |
| |
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|||||||||| |||||||||| | | ||||||||||| |||||||||| ||||||||| | |||||| |||| | ||||||||||| | ||||||| | |
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| T |
53146932 |
cacgctaaaaaacacaaaaaa-atattgaaactaattttgaactcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatg |
53147030 |
T |
|
| Q |
294 |
atgattt |
300 |
Q |
| |
|
||||||| |
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|
| T |
53147031 |
atgattt |
53147037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 48825306 - 48825399
Alignment:
| Q |
207 |
acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgattt |
300 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| || | ||||||||||||| |||||||||||||||| |
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| T |
48825306 |
acaaaaaatagattgaaactaattatgaactcccaaacataaaaggggattaagccacgacatgtggtaattaaaaacaaaattaggatgattt |
48825399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 48825251 - 48825305
Alignment:
| Q |
84 |
taaccagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaa |
138 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||| |
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|
| T |
48825251 |
taaccagaaacttagtctctcaagcacaagaggtgtcagagaagagctaagaaaa |
48825305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 55417020 - 55416955
Alignment:
| Q |
235 |
actcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgattt |
300 |
Q |
| |
|
||||||| ||| | ||| |||||||| ||||||||||||||||||| | |||||||||||||||| |
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|
| T |
55417020 |
actcccaaacaaacaagagaattaagccaccatgtgtggtaattaaaagcaaaattaggatgattt |
55416955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 35562479 - 35562668
Alignment:
| Q |
114 |
aggtgccagagaaaagctaagaaaagtatacgtta-catcaggttaccaacaagaaattaaacattatagccacaaagga-gcacgctaaaacacacaaa |
211 |
Q |
| |
|
||||| ||||||| || ||| ||||||||| |||| ||||| |||||||||||||||||| | ||||||||||| | | ||||| || || ||||||| |
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| T |
35562479 |
aggtgtcagagaagagttaaaaaaagtatatgttaacatcacgttaccaacaagaaattacgcgttatagccacataacatgcacggtataaaacacaaa |
35562578 |
T |
|
| Q |
212 |
aaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgatttt |
301 |
Q |
| |
|
||| | ||||||||||||||||||| || ||||||||||| ||||| | || | |||||||||||| | ||||||||||||||||| |
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| T |
35562579 |
aaataatttgaaactaattatgaactctcaaacataaaaggggattaaatcactacacgtggtaattaaaagcaaaattaggatgatttt |
35562668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 27626109 - 27626202
Alignment:
| Q |
207 |
acaaaaaagagagtgaaactaattatgaactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgattt |
300 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||||||| |||||| ||||| | || |||||||| | |||||||| ||||||| |
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|
| T |
27626109 |
acaaaaaagagactgaacctaattatgaactcccaaacataaaaggagattaagctaccacatatgctaattaaaagcaaaattagaatgattt |
27626202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 21393735 - 21393850
Alignment:
| Q |
88 |
cagaaatttagtctctcaagtacaagaggtgccagagaaaagctaagaaaagtatacgttacatcaggttaccaacaagaaattaaacattatagccaca |
187 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| |||| ||||||||| ||| | ||||||| |||||||||| |||||| ||| ||| | ||||| |
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|
| T |
21393735 |
cagaaacttagtctctcaagcataagaggtgccaaagaagagctaagaagagtgtctgttacatgaggttaccaaaaagaaactaagtgttacaaccaca |
21393834 |
T |
|
| Q |
188 |
aaggagcacgctaaaa |
203 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
21393835 |
gagaagcacgctaaaa |
21393850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 13318027 - 13318093
Alignment:
| Q |
234 |
aactcccagacataaaagggaattaagttaccatgtgtggtaattaaatgtaaaattaggatgattt |
300 |
Q |
| |
|
|||||||| ||| | ||| | |||||| ||||||||||||||||||| | |||||||||||||||| |
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|
| T |
13318027 |
aactcccaaacacagaagaggattaagccaccatgtgtggtaattaaaagcaaaattaggatgattt |
13318093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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