View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10651_high_2 (Length: 299)
Name: NF10651_high_2
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 286
Target Start/End: Complemental strand, 40176253 - 40175989
Alignment:
| Q |
22 |
catggatctattacatatactcatgtaactgttttctttattaaggttatactgaagctactataaagatttgtgaaccaaaagaacaaatatatcaaag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40176253 |
catggatctattacatatactcatgtaactgttttctttattaaggttatactgaagctactataaagatttgtgaaccaaaagaacaaatatatcaaag |
40176154 |
T |
|
| Q |
122 |
agaatcagtgtgaaattggttatgattacacaagtgtctgatatgggcattgtattgtttgatattgctaattcagtctttttctattaatatattttaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40176153 |
agaatcagtgtgaaattggttatgattacacaagtgtctgatatgggcattgtattgtttgatattgctaattcagtctttttctattaatatattttaa |
40176054 |
T |
|
| Q |
222 |
aatgcaatgtggttacattcaattatctagctcaagagccttttaacaactttggctcatcatct |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40176053 |
aatgcaatgtggttacattcaattatctagctcaagagccttttaacaactttggctcatcatct |
40175989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University