View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_1 (Length: 618)
Name: NF10651_low_1
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 12286418 - 12286992
Alignment:
| Q |
18 |
gaaggcagcagaatgggtgtaccaaagacgacggcgcgtgcgatctcacaagaagcatttaacgatctagtcttcgaaaacatcaacgaccttgaaatgg |
117 |
Q |
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| T |
12286418 |
gaaggcagcagaatgggtgtaccaaagacgacggcgcgtgcgatctcacaagaagcatttaacgatctagtcttcgaaaacatcaacgaccttgaaatgg |
12286517 |
T |
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| Q |
118 |
accccaccgaagctcttcaggacgccatccaaactctcactctccaaggcgtcgatctctcaggtccgtacgtatcactaacacatttcattacattcaa |
217 |
Q |
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| T |
12286518 |
accccaccgaagctcttcaggacgccatccaaactctcactctccaaggcgtcgatctctcaggtccgtacgtatcactaacacatttcattacattcaa |
12286617 |
T |
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| Q |
218 |
ttaatctattttatcaaatcattacttgtatcagtgtcgtatccggtgtccgtgtcagtgacttacgattcagtcattgttttaacaggtattgtgacgt |
317 |
Q |
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| T |
12286618 |
ttaatctattttatcaaatcattacttgtatcagtgtcgtatccggtgtccgtgtcagtgacttacgattcagtcattgttttaacaggtattgtgacgt |
12286717 |
T |
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| Q |
318 |
cgcttcccggagagagtaatccggtgatagagtgtttagagaagctgaaacggtttgagaatgaagatattacattggatgagattgtggaagtgtttga |
417 |
Q |
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| T |
12286718 |
cgcttcccggagagagtaatccggtgatagagtgtttagagaagctgaaacagtttgagaatgaagatattacattggatgagattgtggaagtgtttga |
12286817 |
T |
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| Q |
418 |
taaacttgttgagttgtgtggtggtgaagatgggaatggtaatgctgctattgcaacgaaaaatgggggtgttgagttggtttgtggtgtttttgaaaag |
517 |
Q |
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| T |
12286818 |
taaacttgttgagttgtgtggtggtgaagatgggaatggtaatgctgctattgcaacgaaaaatgggggtgttgagttggtttgtggtgtttttgaaaag |
12286917 |
T |
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| Q |
518 |
ataaggagtagtgatggatctcgagttgttcttgtttcgggtttgaatgctctggcgttgttgcttcatggttag |
592 |
Q |
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| T |
12286918 |
ataaggagtagtgatggatctcgagttgttcttgtttcgggtttgaatgctctggcgttgttgcttcatggttag |
12286992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 14748229 - 14748181
Alignment:
| Q |
193 |
cactaacacatttcattacattcaattaatctattttatcaaatcatta |
241 |
Q |
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| T |
14748229 |
cactaacacataggattacattcaattaatttattttataaaatcatta |
14748181 |
T |
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