View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10651_low_2 (Length: 463)

Name: NF10651_low_2
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10651_low_2
NF10651_low_2
[»] chr2 (20 HSPs)
chr2 (1-444)||(37091932-37092360)
chr2 (137-200)||(17981594-17981657)
chr2 (129-210)||(5394485-5394566)
chr2 (129-210)||(37179972-37180053)
chr2 (129-193)||(25423833-25423897)
chr2 (129-202)||(31579208-31579281)
chr2 (137-202)||(42745095-42745160)
chr2 (137-210)||(14551571-14551644)
chr2 (127-189)||(7020352-7020414)
chr2 (129-191)||(9438126-9438188)
chr2 (135-210)||(17655756-17655833)
chr2 (129-200)||(18105344-18105414)
chr2 (127-193)||(13835445-13835511)
chr2 (127-169)||(14121894-14121936)
chr2 (138-193)||(1682120-1682175)
chr2 (128-190)||(3562181-3562243)
chr2 (143-193)||(14412824-14412874)
chr2 (132-178)||(39401072-39401118)
chr2 (140-193)||(38372982-38373035)
chr2 (135-191)||(39562260-39562316)
[»] chr4 (25 HSPs)
chr4 (242-413)||(17346262-17346433)
chr4 (242-413)||(17137361-17137529)
chr4 (129-210)||(31307037-31307118)
chr4 (127-210)||(9012357-9012440)
chr4 (128-210)||(35972431-35972513)
chr4 (129-202)||(51626285-51626358)
chr4 (129-193)||(38766178-38766242)
chr4 (129-210)||(46016238-46016319)
chr4 (127-210)||(33529344-33529427)
chr4 (127-193)||(14854692-14854758)
chr4 (129-210)||(46250526-46250607)
chr4 (127-193)||(15133462-15133528)
chr4 (130-200)||(35334079-35334149)
chr4 (7-74)||(17345574-17345641)
chr4 (135-210)||(45994617-45994692)
chr4 (7-72)||(17138878-17138943)
chr4 (131-186)||(13948587-13948642)
chr4 (128-178)||(13686690-13686740)
chr4 (150-200)||(32005127-32005177)
chr4 (128-203)||(18841573-18841649)
chr4 (129-210)||(31308386-31308467)
chr4 (128-177)||(36990098-36990147)
chr4 (128-184)||(25768685-25768741)
chr4 (128-172)||(51853784-51853828)
chr4 (256-332)||(55295338-55295414)
[»] chr8 (15 HSPs)
chr8 (132-210)||(2744025-2744103)
chr8 (129-210)||(4124995-4125076)
chr8 (129-210)||(7839224-7839305)
chr8 (127-210)||(19715696-19715780)
chr8 (129-210)||(13468716-13468797)
chr8 (129-210)||(30936093-30936174)
chr8 (143-204)||(39086855-39086916)
chr8 (135-189)||(12958077-12958131)
chr8 (135-210)||(8521793-8521867)
chr8 (129-170)||(30056012-30056053)
chr8 (128-193)||(40320184-40320249)
chr8 (131-202)||(13005657-13005728)
chr8 (135-178)||(36994503-36994546)
chr8 (127-174)||(24988586-24988633)
chr8 (129-170)||(15683018-15683059)
[»] chr7 (25 HSPs)
chr7 (129-210)||(29059894-29059975)
chr7 (129-210)||(31492192-31492273)
chr7 (135-200)||(21747021-21747086)
chr7 (137-217)||(37339697-37339777)
chr7 (137-210)||(28665187-28665260)
chr7 (127-210)||(19477223-19477303)
chr7 (127-210)||(11486715-11486798)
chr7 (135-209)||(31776513-31776587)
chr7 (132-209)||(45778956-45779033)
chr7 (127-203)||(20207584-20207660)
chr7 (127-210)||(33299166-33299249)
chr7 (135-200)||(35707941-35708006)
chr7 (129-210)||(28537479-28537556)
chr7 (129-167)||(14545032-14545070)
chr7 (127-193)||(24172296-24172362)
chr7 (128-178)||(29428795-29428845)
chr7 (127-210)||(32470003-32470088)
chr7 (135-212)||(25421210-25421286)
chr7 (148-201)||(36821060-36821113)
chr7 (134-202)||(3231313-3231381)
chr7 (132-190)||(28828756-28828814)
chr7 (135-193)||(42741797-42741854)
chr7 (136-210)||(1424669-1424745)
chr7 (153-210)||(49118220-49118277)
chr7 (129-165)||(13254117-13254153)
[»] chr5 (10 HSPs)
chr5 (129-210)||(5123469-5123550)
chr5 (129-210)||(10592016-10592097)
chr5 (137-210)||(22187969-22188042)
chr5 (135-210)||(31113429-31113504)
chr5 (127-210)||(25983752-25983835)
chr5 (129-200)||(30784967-30785038)
chr5 (132-210)||(29553631-29553709)
chr5 (128-177)||(36212984-36213033)
chr5 (128-206)||(373739-373817)
chr5 (268-315)||(6796801-6796848)
[»] chr3 (21 HSPs)
chr3 (137-210)||(8757441-8757514)
chr3 (129-210)||(20861337-20861418)
chr3 (129-210)||(27763810-27763891)
chr3 (129-210)||(30995936-30996017)
chr3 (127-210)||(25224786-25224869)
chr3 (131-210)||(1642697-1642776)
chr3 (127-210)||(48204282-48204365)
chr3 (135-210)||(55123192-55123267)
chr3 (127-210)||(38331215-38331299)
chr3 (127-209)||(22288322-22288404)
chr3 (148-204)||(40318426-40318482)
chr3 (128-210)||(44941236-44941317)
chr3 (128-171)||(15446084-15446127)
chr3 (162-209)||(22288643-22288690)
chr3 (127-210)||(40294699-40294782)
chr3 (128-210)||(46725513-46725594)
chr3 (128-169)||(15283159-15283200)
chr3 (136-193)||(39950308-39950365)
chr3 (135-210)||(25739182-25739258)
chr3 (127-193)||(48210948-48211014)
chr3 (150-210)||(43621282-43621342)
[»] scaffold0182 (1 HSPs)
scaffold0182 (129-211)||(26420-26502)
[»] chr1 (20 HSPs)
chr1 (136-210)||(16756178-16756252)
chr1 (129-202)||(42297421-42297494)
chr1 (128-212)||(15642543-15642628)
chr1 (129-210)||(36806700-36806781)
chr1 (129-210)||(49071666-49071747)
chr1 (129-198)||(28724761-28724830)
chr1 (130-193)||(9780977-9781040)
chr1 (145-203)||(18428120-18428178)
chr1 (244-409)||(8571806-8571971)
chr1 (127-204)||(46864178-46864255)
chr1 (135-210)||(22022215-22022290)
chr1 (127-210)||(44913196-44913279)
chr1 (129-170)||(12035639-12035680)
chr1 (154-194)||(7242794-7242834)
chr1 (142-202)||(32534184-32534244)
chr1 (136-175)||(6607700-6607739)
chr1 (135-178)||(10367599-10367642)
chr1 (151-182)||(21774671-21774702)
chr1 (127-193)||(10750684-10750750)
chr1 (137-210)||(39547335-39547408)
[»] chr6 (12 HSPs)
chr6 (130-210)||(12836868-12836948)
chr6 (129-207)||(12411237-12411315)
chr6 (136-210)||(21910301-21910374)
chr6 (132-193)||(28099335-28099396)
chr6 (131-191)||(9536858-9536918)
chr6 (128-180)||(21028843-21028895)
chr6 (128-180)||(21028980-21029032)
chr6 (129-167)||(423744-423782)
chr6 (129-191)||(31412211-31412273)
chr6 (137-192)||(17177235-17177290)
chr6 (128-210)||(278479-278561)
chr6 (128-178)||(28933226-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (136-210)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (127-193)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (128-171)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 37092360 - 37091932
Alignment:
Q  1 tctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaactttcttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092360 tctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaactttcttgtt 37092261  T
Q  101 tagnnnnnnnnnnnnnaaagtatcatcttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    ||               ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  37092260 ta---------------aagtatcatcttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggttta 37092176  T
Q  201 caccaaaaaagactaatgttaacagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaac 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092175 caccaaaaaagactaatgttaagagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaac 37092076  T
Q  301 tgtccaattccaccagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092075 tgtccaattccaccagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccg 37091976  T
Q  401 caggtggttatggtggcatcaaaattaacagccgccctatgatt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37091975 caggtggttatggtggcatcaaaattaacagccgccctatgatt 37091932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 17981594 - 17981657
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 5394485 - 5394566
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||| |||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaa 5394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 37180053 - 37179972
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaa 37179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 25423833 - 25423897
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 31579281 - 31579208
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 42745160 - 42745095
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 14551571 - 14551644
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||  | |||| |||||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttataccaaaaaa 14551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 7020414 - 7020352
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 189  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||    
T  7020414 cttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 191  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 17655756 - 17655833
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagtt--gtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||| | |||||| |||||||||||||||||||||||||  ||||| |||||||||| | ||||| ||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttacgccaaaaaa 17655833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 18105414 - 18105344
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatatccggttta 18105344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 13835511 - 13835445
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||||||| |||||| ||||||||||| | ||||||||||| || ||||||||| | ||||||||||    
T  13835511 cttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 14121936 - 14121894
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtct 169  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14121936 cttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 1682120 - 1682175
Alignment:
Q  138 tttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||||| | ||| ||||||||||||||||||||||||| || | |||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 3562243 - 3562181
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 190  Q
    |||||| ||||||||||||||||| ||| |||| | |||||| |||||||| |||||| ||||    
T  3562243 ttgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 14412824 - 14412874
Alignment:
Q  143 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  14412824 gtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 39401118 - 39401072
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 38373035 - 38372982
Alignment:
Q  140 tgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||||||||||||| ||| ||||||||   |||||| ||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacc 38372982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 191  Q
    |||||||  |||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 7e-47; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 242 - 413
Target Start/End: Original strand, 17346262 - 17346433
Alignment:
Q  242 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 341  Q
    |||||||||||||||  |||||||| || |||||||| |||||||| ||||| ||||| ||||||||  | ||||| |||||||| |||||| |||||||    
T  17346262 ataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca 17346361  T
Q  342 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 413  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  17346362 agtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatgg 17346433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 242 - 413
Target Start/End: Complemental strand, 17137529 - 17137361
Alignment:
Q  242 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 341  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||| ||||| ||||| ||||||||  | |||||  |||||   |||||| |||||||    
T  17137529 ataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttca 17137433  T
Q  342 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 413  Q
    |||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  17137432 agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatgg 17137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 31307118 - 31307037
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 9012357 - 9012440
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||    
T  9012357 cttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 35972431 - 35972513
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  35972431 ttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 51626358 - 51626285
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 38766178 - 38766242
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 46016238 - 46016319
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 33529344 - 33529427
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||| || ||||||||||  | |||||||| |||||    
T  33529344 cttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaa 33529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 14854692 - 14854758
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  14854692 cttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 46250607 - 46250526
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| | || |||||||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggataaccggattacaccaaaaaa 46250526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 15133462 - 15133528
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  15133462 cttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 35334149 - 35334079
Alignment:
Q  130 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggttta 35334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 17345574 - 17345641
Alignment:
Q  7 actaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagt 74  Q
    ||||||||||| |||||| | | |||||| |||||||||||| |||||||||| ||||||||||||||    
T  17345574 actaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt 17345641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 45994617 - 45994692
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||  ||||||||  ||||| |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaa 45994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 17138943 - 17138878
Alignment:
Q  7 actaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggtta 72  Q
    ||||||||||| |||||| | | ||||||||| ||||||||| |||||||||| ||||||||||||    
T  17138943 actaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttcttggtta 17138878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  131 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcgga 186  Q
    |||||||||||  || |||||||||||||||||||||||| ||||||| |||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 13686690 - 13686740
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  13686690 ttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttg 13686740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 32005177 - 32005127
Alignment:
Q  150 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccggttta 32005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 18841573 - 18841649
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgtgcgcggaggataccgggtttacac 203  Q
    |||||| | |||||| ||| |||| |||| |||||||||||||||| ||||| || ||||||||||| |||||||||    
T  18841573 ttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 31308386 - 31308467
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| |||| |||||||||||| | ||||||||||||  | |||||||| |||||| |||||   |||||| |||||||    
T  31308386 tgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttacatcaaaaaa 31308467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 36990147 - 36990098
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 177  Q
    ||||||||||||||  ||||||||||||||||| |||||| | |||||||    
T  36990147 ttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagtt 36990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 25768741 - 25768685
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcg 184  Q
    |||||| |||||||||| |||||||||| || |||||||||||| || ||| |||||    
T  25768741 ttgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 51853784 - 51853828
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccg 172  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||    
T  51853784 ttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 55295338 - 55295414
Alignment:
Q  256 cagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttactta 332  Q
    ||||| |||||||| |||||||| |||||||| | ||| ||||||||||| || || || ||| ||||||| |||||    
T  55295338 cagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcactta 55295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 2744025 - 2744103
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 4125076 - 4124995
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 7839305 - 7839224
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || ||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgggttatacaaaaaaa 7839224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 19715780 - 19715696
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19715780 cttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacacaaaaaaa 19715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 13468797 - 13468716
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaa 13468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 30936093 - 30936174
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccggtttataccaaaaaa 30936174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 39086855 - 39086916
Alignment:
Q  143 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 204  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 189  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 8521793 - 8521867
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | ||||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 30056053 - 30056012
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctc 170  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 40320184 - 40320249
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40320184 ttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 13005728 - 13005657
Alignment:
Q  131 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||| |||||||| ||||||  |||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacctagtttaca 13005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 36994546 - 36994503
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 24988586 - 24988633
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgca 174  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||    
T  24988586 cttgccgctcatttgagtcccacaatactcgagggattagtctccgca 24988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctc 170  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 29059894 - 29059975
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 31492192 - 31492273
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 21747086 - 21747021
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 37339777 - 37339697
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaat 217  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||| ||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaatactaat 37339697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 28665187 - 28665260
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 19477303 - 19477223
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  19477303 cttgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggatagctggtttacacccaaaaa 19477223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 11486798 - 11486715
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||  |||||| |||||||||||||| ||||||||| ||||||    
T  11486798 cttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacacaaaaaaa 11486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 31776513 - 31776587
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 209  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| | |||||||||||| |||||| ||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggtttataccaaaaa 31776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 45778956 - 45779033
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 209  Q
    ||||| |||| ||| |||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 20207584 - 20207660
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 203  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||    
T  20207584 cttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttacac 20207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 33299166 - 33299249
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||| ||||||||| | ||||||||||  | |||||||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  33299166 cttgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacacaaaaaaa 33299249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 35707941 - 35708006
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 28537479 - 28537556
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||  |||| |||||||| |||||| |||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccggtttataccaaaaaa 28537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagt 167  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 24172296 - 24172362
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||| ||| |||| ||||||||||||||| ||||||||||  ||||||| |||||||| |||||    
T  24172296 cttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 29428845 - 29428795
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    |||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  29428845 ttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 32470003 - 32470088
Alignment:
Q  127 cttgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||  ||||||||||| | |||||| ||| |||||    
T  32470003 cttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaaaa 32470088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 25421286 - 25421210
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaaga 212  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||  | ||||||||||  |||||||||||||||||    
T  25421286 ccatttgggtcccacaaagctcaagggattagtgtttgcagttgt-agtggaggatacccagtttacaccaaaaaaga 25421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  148 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac 201  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 3231313 - 3231381
Alignment:
Q  134 tccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||| ||||||||||||| | ||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 190  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||  ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 42741854 - 42741797
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacc 42741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 1424669 - 1424745
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcg--cggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||  || ||| |||||||||||||||||| |||  || |||| ||| | ||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgcacgaaggacacccgatttacaccaaaaaa 1424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 49118277 - 49118220
Alignment:
Q  153 gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||||||| |||||| ||||| | || |||| ||||||||| ||||||    
T  49118277 gctcgagggattagtctctgcagttttgcgcagtggttacccggtttacacaaaaaaa 49118220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggatta 165  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 5123550 - 5123469
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 10592016 - 10592097
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 22188042 - 22187969
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaa 22187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 31113429 - 31113504
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaa 31113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 25983752 - 25983835
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  25983752 cttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 30785038 - 30784967
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 200  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 29553631 - 29553709
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||||||  | ||||| |||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccagattacaacaaaaaa 29553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 36212984 - 36213033
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 177  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212984 ttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 373817 - 373739
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaa 206  Q
    |||||||| |||||||||  |||||| || |||||||| |||||||||||| || |||||||||||   ||||||||||    
T  373817 ttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacaccaa 373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 6796801 - 6796848
Alignment:
Q  268 aattcatggcaagatggagtatatggaacaaactgtccaattccacca 315  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||    
T  6796801 aattcatggcaagatggagtactgggaacaaactgtcctattccacca 6796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 8757441 - 8757514
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 20861337 - 20861418
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 27763810 - 27763891
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacacaaaaaaa 27763891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 30996017 - 30995936
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacctaaaaa 30995936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 25224786 - 25224869
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  25224786 cttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 1642697 - 1642776
Alignment:
Q  131 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 48204365 - 48204282
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||| |||||    
T  48204365 cttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaa 48204282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 55123192 - 55123267
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgatttataccaaaaaa 55123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 38331215 - 38331299
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac-accaaaaaa 210  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||    
T  38331215 cttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 22288322 - 22288404
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 209  Q
    |||| |||||||||| ||  |||||| ||| ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288322 cttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  148 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 204  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 44941317 - 44941236
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttataccaaaaaa 44941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 15446084 - 15446127
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 171  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15446084 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 22288643 - 22288690
Alignment:
Q  162 attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 209  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288643 attagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 40294699 - 40294782
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||  ||||||  ||||||||| ||||| ||||||||||||||||||| || |  |||||||| | ||||||||||||||    
T  40294699 cttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttacaccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 46725513 - 46725594
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||  |||||  |||||||||||||  |||||||||| |||||    
T  46725513 ttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaa 46725594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 15283159 - 15283200
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtct 169  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 39950308 - 39950365
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||   ||||||||||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 25739182 - 25739258
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgca-gttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||| ||  |||||   ||||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacaccaaaaaa 25739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 48211014 - 48210948
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||||| |||| ||||||||||| ||||||| |||  ||||||||||||  |||||| ||||||    
T  48211014 cttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacc 48210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 43621342 - 43621282
Alignment:
Q  150 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||| | || ||| |||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaa 43621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 26420 - 26502
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaag 211  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 16756178 - 16756252
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 42297494 - 42297421
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 15642543 - 15642628
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca-ccaaaaaaga 212  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | |||||| ||||||||||    
T  15642543 ttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||| |||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 49071666 - 49071747
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| | | ||||||||||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaa 49071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 28724761 - 28724830
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtt 198  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 9781040 - 9780977
Alignment:
Q  130 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  145 cccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 203  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 409
Target Start/End: Complemental strand, 8571971 - 8571806
Alignment:
Q  244 aggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaag 343  Q
    ||||||||||| |||||||| ||||| ||||   |||||||||| | ||||||||  ||||| |||||||| ||  ||||||| || ||  | |||||||    
T  8571971 aggaatggagtccagcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaag 8571872  T
Q  344 taaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggtt 409  Q
    |||||||||| |||||||| | || ||| || || || |||||||| ||||| || || |||||||    
T  8571871 taaaagatcaaattggtagtttctattatttcccatctcttgcattccacaaagctgctggtggtt 8571806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 46864178 - 46864255
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 204  Q
    ||||||||||||||||||  ||||||| |||||||||||||||| ||||||| ||||  |||||||| | ||||||||    
T  46864178 cttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 22022215 - 22022290
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  || ||||||||||  || ||||| ||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 44913196 - 44913279
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| ||||||  |||| |||||||||   ||||||| ||||||    
T  44913196 cttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacacaaaaaaa 44913279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 12035639 - 12035680
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctc 170  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 7242834 - 7242794
Alignment:
Q  154 ctcgagggattagtctccgcagttgtgcgcggaggataccg 194  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagataccg 7242794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 32534184 - 32534244
Alignment:
Q  142 ggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 202  Q
    |||| ||||||||||||| | |||||||||||| ||| |||| ||||||||| ||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 6607739 - 6607700
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcag 175  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcag 6607700  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 10367599 - 10367642
Alignment:
Q  135 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttg 10367642  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 182
Target Start/End: Original strand, 21774671 - 21774702
Alignment:
Q  151 atgctcgagggattagtctccgcagttgtgcg 182  Q
    ||||||||||||||||||||||||||||||||    
T  21774671 atgctcgagggattagtctccgcagttgtgcg 21774702  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 193
Target Start/End: Original strand, 10750684 - 10750750
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||| |||||||| || ||||||| |||||||||||||||   |||||| |||| |||||||||    
T  10750684 cttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacc 10750750  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 39547408 - 39547335
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||| |||| ||||||| |||| |||||| |||||||||||| |||| ||||||  | |||||||||| |||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaa 39547335  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 12836948 - 12836868
Alignment:
Q  130 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaa 12836868  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 12411237 - 12411315
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaa 207  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |||||| ||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttataccaaa 12411315  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 21910301 - 21910374
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaaaa 21910374  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 28099335 - 28099396
Alignment:
Q  132 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  131 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 191  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 21028895 - 21028843
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 180  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21028895 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 21029032 - 21028980
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 180  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21029032 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagt 167  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 31412211 - 31412273
Alignment:
Q  129 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 191  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| |||||| || |||||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggata 31412273  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 17177235 - 17177290
Alignment:
Q  137 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatac 192  Q
    |||||| || |||||| |||||||||||| |||||| | |||||||||||||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 278479 - 278561
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    ||||||||||||| ||||||||||  ||| |||||||||||  | ||||||  | ||||||||||| | ||||| ||||||||    
T  278479 ttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttaccccaaaaaa 278561  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 28933226 - 28933276
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 178  Q
    |||||| |||||||||| |||||||||||||| || |||| ||||||||||    
T  28933226 ttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttg 28933276  T

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Target: scaffold0013 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 29197 - 29123
Alignment:
Q  136 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 210  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacacaaaaaaa 29123  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 27279 - 27213
Alignment:
Q  127 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 193  Q
    ||||||| |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  27279 cttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 16108 - 16065
Alignment:
Q  128 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 171  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  16108 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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