View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_21 (Length: 255)
Name: NF10651_low_21
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 5983490 - 5983712
Alignment:
| Q |
15 |
tgagatgaagggctacaccgttttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcatt |
114 |
Q |
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| T |
5983490 |
tgagatgaagggctacaccgtcttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcatt |
5983589 |
T |
|
| Q |
115 |
ataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatagtataggtaatcttgatggttatga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
5983590 |
ataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggtaatcttgatggttataa |
5983689 |
T |
|
| Q |
215 |
tgattgaagttgaggatcacatt |
237 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5983690 |
tgattgaagttgaggatcacatt |
5983712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 5947889 - 5948111
Alignment:
| Q |
15 |
tgagatgaagggctacaccgttttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcatt |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5947889 |
tgagatgaagggctacaccgtcttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgagagggaaattggcatt |
5947988 |
T |
|
| Q |
115 |
ataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatagtataggtaatcttgatggttatga |
214 |
Q |
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| T |
5947989 |
ataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggtaatcttgatggttataa |
5948088 |
T |
|
| Q |
215 |
tgattgaagttgaggatcacatt |
237 |
Q |
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||||||||||||||||||||||| |
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| T |
5948089 |
tgattgaagttgaggatcacatt |
5948111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 55 - 237
Target Start/End: Original strand, 5959012 - 5959194
Alignment:
| Q |
55 |
agatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatga |
154 |
Q |
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||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5959012 |
agatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatga |
5959111 |
T |
|
| Q |
155 |
aaattaccttgtagatttggagatgaggttgaatagtataggtaatcttgatggttatgatgattgaagttgaggatcacatt |
237 |
Q |
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| T |
5959112 |
aaattactttgctgatttggagatgaggttgaatggtataggtaatcttgatggtgatgatgattgaagttgagggtcacatt |
5959194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 5920367 - 5920500
Alignment:
| Q |
79 |
tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga |
175 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5920367 |
tggtattggattttgaatgtgaaggaaattgccattataatggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttgga |
5920466 |
T |
|
| Q |
176 |
gatgaggttgaatagtataggtaatcttgatggt |
209 |
Q |
| |
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|||||||||| |||| |||| | ||||| ||||| |
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| T |
5920467 |
gatgaggttggatagcatagttgatcttcatggt |
5920500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 236
Target Start/End: Original strand, 5886166 - 5886326
Alignment:
| Q |
79 |
tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga |
175 |
Q |
| |
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||||||| |||| | ||||| | ||||||||| ||||||||||| |||||| ||||||||||||||||||||| | |||||| |||||||||||| || |
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| T |
5886166 |
tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttaga |
5886265 |
T |
|
| Q |
176 |
gatgaggttgaatagtataggtaatcttgatggttatgatgattgaagttgaggatcacat |
236 |
Q |
| |
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|||||||||| | ||| | | ||||||||| | |||||||| | |||| |||||||||| |
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| T |
5886266 |
gatgaggttggaaggtaaaactgatcttgatgatgatgatgataggagtttaggatcacat |
5886326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 5841847 - 5841956
Alignment:
| Q |
79 |
tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga |
175 |
Q |
| |
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||||||| |||| | ||||| | ||||||||| ||||||||||| |||||| |||||| |||||||||||||| | |||||| ||||||||||||||| |
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| T |
5841847 |
tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttgga |
5841946 |
T |
|
| Q |
176 |
gatgaggttg |
185 |
Q |
| |
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|||||||||| |
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| T |
5841947 |
gatgaggttg |
5841956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 5848557 - 5848666
Alignment:
| Q |
79 |
tggtattggattttgaatgtgagggaaattggcattataatggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtagatttgga |
175 |
Q |
| |
|
||||||| |||| | ||||| | ||||||||| ||||||||||| |||||| |||||| |||||||||||||| | |||||| ||||||||||||||| |
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| T |
5848557 |
tggtatttgattctcaatgtcaaggaaattgggattataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttgga |
5848656 |
T |
|
| Q |
176 |
gatgaggttg |
185 |
Q |
| |
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|||||||||| |
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| T |
5848657 |
gatgaggttg |
5848666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 5886605 - 5886753
Alignment:
| Q |
83 |
attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
182 |
Q |
| |
|
|||||||||||| || | ||||| |||||||| ||| || |||||||||||||||||||||| ||| ||||| || ||| ||||||||| |||| |
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| T |
5886605 |
attggattttgattgggtgggaacttggcattgaaattgttattgatgtctacctttgtatcaggttgttgaaa---acattgcagatttggaaatgaat |
5886701 |
T |
|
| Q |
183 |
ttgaatagtataggtaatcttgatggttatgatgattgaagttgaggatcacatt |
237 |
Q |
| |
|
||||| ||||||| |||||||||| | | |||||||||| ||||||||||| |
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|
| T |
5886702 |
ttgaaaggtataggagatcttgatgg---taaggattgaagtttaggatcacatt |
5886753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 5842304 - 5842452
Alignment:
| Q |
83 |
attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
182 |
Q |
| |
|
|||||||||||| || | |||| ||||||| |||||| ||||||||||||| ||||| || |||| ||||| || ||| | ||||||||| ||| |
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| T |
5842304 |
attggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaa---acattgcatatttggagacgagt |
5842400 |
T |
|
| Q |
183 |
ttgaatagtataggtaatcttgatggttatgatgattgaagttgaggatcacatt |
237 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||||||| || |||||||| |
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|
| T |
5842401 |
ttgaaaggtataggtgatcttgatgg---tgaggattgaagtttagcatcacatt |
5842452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 5849014 - 5849162
Alignment:
| Q |
83 |
attggattttgaatgtgagggaaattggcattataatggtcattgatgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgagg |
182 |
Q |
| |
|
|||||||||||| || | |||| ||||||| |||||| ||||||||||||| ||||| || |||| ||||| || ||| | ||||||||| ||| |
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| T |
5849014 |
attggattttgattgggtaggaatctggcattgaaatggttattgatgtctaccattgtaccagtttggtgaaa---acattgcatatttggagacgagt |
5849110 |
T |
|
| Q |
183 |
ttgaatagtataggtaatcttgatggttatgatgattgaagttgaggatcacatt |
237 |
Q |
| |
|
||||| |||||||| |||||||||| ||| |||||||||| || |||||||| |
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|
| T |
5849111 |
ttgaaaggtataggtgatcttgatgg---tgaggattgaagtttagcatcacatt |
5849162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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