View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_23 (Length: 250)
Name: NF10651_low_23
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29934473 - 29934235
Alignment:
| Q |
1 |
ttagaggaggaagctgtgatttcatacacacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattatt |
100 |
Q |
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| T |
29934473 |
ttagaggaggaagctgtgatttcatacacacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattatt |
29934374 |
T |
|
| Q |
101 |
ggagacttccaaacgatgcaactcttaaggatgttgttactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttctgtaagtct |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934373 |
ggagacttccaaatgatgcaactcttaaggatgttgtcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttctgtaagtct |
29934274 |
T |
|
| Q |
201 |
gccatattttcattataattgtgataaatatgttttcat |
239 |
Q |
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| T |
29934273 |
gccatattttcattataattgtgataaatatgttttcat |
29934235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 29931749 - 29931559
Alignment:
| Q |
1 |
ttagaggaggaagctgtgatttcatacacacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattatt |
100 |
Q |
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|||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29931749 |
ttagaggaggaagctgtgatttcatatacacaacatttgaatgcaattgagagtggtaaagttgaaaatgtacctgctcctgctattgcaattgattatt |
29931650 |
T |
|
| Q |
101 |
ggagacttccaaacgatgcaactcttaaggatgttgttactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
191 |
Q |
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| T |
29931649 |
ggagacttcctaaggatgcaactcttaaggatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
29931559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 37469718 - 37469832
Alignment:
| Q |
62 |
ttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaacgatgcaactcttaaggatgttgttactgttattcgtgctgatgaggc |
161 |
Q |
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|||||||||| ||||||||||| ||||| || || |||||||| ||||| || ||||| | | || |||||| | || || ||||||||||| ||||| |
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| T |
37469718 |
ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc |
37469817 |
T |
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| Q |
162 |
tcatcatagggatgt |
176 |
Q |
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||| ||| ||||||| |
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| T |
37469818 |
tcaccatcgggatgt |
37469832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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