View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_24 (Length: 249)
Name: NF10651_low_24
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 27867714 - 27867558
Alignment:
| Q |
96 |
gataaatttacaagttagagttttttcttgagtggatttaaaagttacg-------------ttgaaatgaataaaactctttttcttttgaagcagttc |
182 |
Q |
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| T |
27867714 |
gataaatttacaggttagagttttttcttgagtggattcaaaagttagtgtgttaagcacatttgaaatgaataaaactctttttcttttgaagcagttc |
27867615 |
T |
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| Q |
183 |
aacttttgcatctccttacaaaaatgcaaaacccttatactaaccattccattcttc |
239 |
Q |
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| T |
27867614 |
aacttttgcatcttcttacaaaaatgcaaaacccttacactaaccattccattcttc |
27867558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 27913823 - 27913666
Alignment:
| Q |
96 |
gataaatttacaagttagagttttttcttgagtggatttaaaagttacg-------------ttgaaatgaataaaactctttttcttttgaagcagttc |
182 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27913823 |
gataaatttacaggttagagttttttctggagtggatttaaaagttagtgtgttaagcacatttgaaatgaataaaactctttttcttttgaagcagttc |
27913724 |
T |
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| Q |
183 |
aacttttgcatctccttacaaaaatgcaaaacccttatac-taaccattccattcttc |
239 |
Q |
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| T |
27913723 |
aacttttgcatcttcttacaaaaatgcaaaacccttacacgaaaccattccattcttc |
27913666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 27960242 - 27960085
Alignment:
| Q |
96 |
gataaatttacaagttagagttttttcttgagtggatttaaaagttacg-------------ttgaaatgaataaaactctttttcttttgaagcagttc |
182 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27960242 |
gataaatttacaggttagagttttttctggagtggatttaaaagttagtgtgttaagcacatttgaaatgaataaaactctttttcttttgaagcagttc |
27960143 |
T |
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| Q |
183 |
aacttttgcatctccttacaaaaatgcaaaacccttatac-taaccattccattcttc |
239 |
Q |
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||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
27960142 |
aacttttgcatcttcttacaaaaatgcaaaacccttacacgaaaccattccattcttc |
27960085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 27971916 - 27971869
Alignment:
| Q |
192 |
atctccttacaaaaatgcaaaacccttatactaaccattccattcttc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27971916 |
atctccttacaaaaatgcaaaacccttatactaaccattccattcttc |
27971869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 28029185 - 28029138
Alignment:
| Q |
192 |
atctccttacaaaaatgcaaaacccttatactaaccattccattcttc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28029185 |
atctccttacaaaaatgcaaaacccttatactaaccattccattcttc |
28029138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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