View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_27 (Length: 240)
Name: NF10651_low_27
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29934602 - 29934824
Alignment:
| Q |
1 |
ttgtcatcaaatgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccagcatgttgaaattttcttaaagattttaagtgtaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
29934602 |
ttgtcatcaaatgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccggcatgttgaaattttcttagagattttaagtgtaaaag |
29934701 |
T |
|
| Q |
101 |
catccctcccaccattccagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934702 |
catccctcccaccattccagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaata |
29934801 |
T |
|
| Q |
201 |
atttaattttgatacattgtgtc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
29934802 |
atttaattttgatacattgtgtc |
29934824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 29931878 - 29932075
Alignment:
| Q |
1 |
ttgtcatcaaatgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccagcatgttgaaattttcttaaagattttaagtgtaaaag |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||| |
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| T |
29931878 |
ttgtcatcaaatgcatcctctcattctctgcttcttcaagtaatgctttgatccaaccaccagtgtgttgaaattttcttagagacttcaagtgtaaaag |
29931977 |
T |
|
| Q |
101 |
catccctcccaccattccagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaa |
198 |
Q |
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| T |
29931978 |
catccctcccaccattggcgggacggctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcagattaatcaa |
29932075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 37469517 - 37469366
Alignment:
| Q |
12 |
tgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccagcatgttgaaattttcttaaagattttaagtgtaaaagcatccctccca |
111 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||| | || || | ||| || ||||||||||| | |
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| T |
37469517 |
tgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctccaa |
37469418 |
T |
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| Q |
112 |
ccattccagggaccgctgctattgtttctagcatcattgcatggcaaccata |
163 |
Q |
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||||||||||||| ||||| | |||||| |||||||||||| |||||||||| |
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| T |
37469417 |
ccattccagggacagctgcaactgtttcaagcatcattgcacggcaaccata |
37469366 |
T |
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