View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_3 (Length: 462)
Name: NF10651_low_3
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 180940 - 181377
Alignment:
| Q |
17 |
atttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctg |
116 |
Q |
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| T |
180940 |
atttcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatg |
181039 |
T |
|
| Q |
117 |
ttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
181040 |
ttaagaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttc |
181139 |
T |
|
| Q |
217 |
aagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgt |
316 |
Q |
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| T |
181140 |
cagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgt |
181239 |
T |
|
| Q |
317 |
ttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcata |
416 |
Q |
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| T |
181240 |
ttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcata |
181339 |
T |
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| Q |
417 |
ttaataaaagtcataagcttcctttttcagtttcttct |
454 |
Q |
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| T |
181340 |
ttaataaaagtcataagcttcctttttcagtttcttct |
181377 |
T |
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Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 1701365 - 1701804
Alignment:
| Q |
15 |
aaatttcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1701365 |
aaatttcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatata |
1701464 |
T |
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| Q |
115 |
tgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
1701465 |
tgttaagaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggt |
1701564 |
T |
|
| Q |
215 |
tcaagtaacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctc |
314 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
1701565 |
tcaagtaacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctc |
1701664 |
T |
|
| Q |
315 |
gtttcgggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtca |
414 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| || |
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| T |
1701665 |
gtttcggtcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgcca |
1701764 |
T |
|
| Q |
415 |
tattaataaaagtcataagcttcctttttcagtttcttct |
454 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1701765 |
tattaataaaagtcataagcttcctttttctgtttcttct |
1701804 |
T |
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