View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10651_low_4 (Length: 428)
Name: NF10651_low_4
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 25874241 - 25874639
Alignment:
| Q |
14 |
agagattaataaggacattttttagaagaatcttatagagataatannnnnnnaaagagtgtatcatgaacaatttattgcacctttcatagtatatgta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25874241 |
agagattaataaggacattttttagaagaatcttatagagataatatttttttaaagagtgtatcatgaacaatttattgcacctttcatagtatatgta |
25874340 |
T |
|
| Q |
114 |
accaatgcgtgcatattgatattggagttggtaacattttatataagattgtcagaaagtaaccgaagtttctttcaacaagaaaaacagaatcttttca |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25874341 |
accaatgcatgcatattgatattggagttggtaacattttatataagattgtcagaaagtaaccgaagtttctttcaacaagaaaaacagaatcttttca |
25874440 |
T |
|
| Q |
214 |
ttgagattggctaagactgagagtgttttcctgccctagtgtgtgagattgagagagacaaaaggcatggaaacctgtaacagaaattggaaacctaaat |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25874441 |
ttgagattggctacgactgagagtgttttcctgccctagtgtgtgagattgagagagacaaaaggcatggaaacctgtaacagaaattggaaacctaaat |
25874540 |
T |
|
| Q |
314 |
gttgctgcaagatgaaaagtcatgccaaaattgtttatcataatgaagaccttataattaatacacattggtgatgatgcagaaatattaacttgttag |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25874541 |
gttgctgcaagatgaaaagtcatgccaaaattgtttatcataatgaagaccttataattaatacacattggtgatgatgcagaaatattaacttgttag |
25874639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University