View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_6 (Length: 350)
Name: NF10651_low_6
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 19379161 - 19378833
Alignment:
| Q |
17 |
attaactggcacacgacatactacagttcatgttccacacaagtacctgtctccatcaccnnnnnnnnnn----------actaaagggaaagttaactt |
106 |
Q |
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| T |
19379161 |
attaactggcacacgacatactacagttcatgttccacacaagtacctgtctccatcaccttttttttttcttttttttgactaaagggaaagttaactt |
19379062 |
T |
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| Q |
107 |
tactttagcacagtaattaaaggatgggtgatgatgatataatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacg |
206 |
Q |
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| T |
19379061 |
tactttagcacagtaattaaaggatgggtgatgatgatataatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacg |
19378962 |
T |
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| Q |
207 |
acaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgccttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttc |
306 |
Q |
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| T |
19378961 |
acaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgccttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttc |
19378862 |
T |
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| Q |
307 |
ttcctgtatcgactaattgatgtaagtgt |
335 |
Q |
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| T |
19378861 |
ttcctgtatcgactaattgatgtaagtgt |
19378833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 87 - 341
Target Start/End: Complemental strand, 19404127 - 19403880
Alignment:
| Q |
87 |
actaaagggaaagttaactttactttagcacagtaattaaaggatgggtgatgatgatataatatagcatatcgttgttcacaatattattcactaggtc |
186 |
Q |
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| T |
19404127 |
actaaaggaaaagataaatttaatttagcacagtaattaaaggatgggtgatgatgatataatatagcat--cgttgttcattatattattcactaggcc |
19404030 |
T |
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| Q |
187 |
gcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgccttgtgatcactgtgcgacaaaatagta |
286 |
Q |
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| T |
19404029 |
gcaagatcaggttgtttacgacaacagtgttacctatatgtt-atacaac----atagcaagcaatgtttgccttgtgatcactgtgagacaaaatagta |
19403935 |
T |
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| Q |
287 |
attccgctagcctccccttcttcctgtatcgactaattgatgtaagtgttcttct |
341 |
Q |
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| T |
19403934 |
atgccgctagccttctcttcttcctgtatcgactaattgatgtaagtgttcttct |
19403880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 103 - 341
Target Start/End: Complemental strand, 18106508 - 18106274
Alignment:
| Q |
103 |
actttactttagcacagtaattaaaggatgggtgatgatgatataatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtt |
202 |
Q |
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| T |
18106508 |
actttactattgcacaataattaaaagattggtgatgatgatataatatagcatt--gttgttcacaatattattcactatgttgcaagctcgggttgtt |
18106411 |
T |
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| Q |
203 |
tacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgccttgtgatcactgtgcgacaaaatagtaattccgctagcctccc |
302 |
Q |
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| T |
18106410 |
tacgacaaccgtgttacctatatgtttataca----acatagcaagcaatgtttgccttgtgatcactgtgagacacaatagtaatgccactagccttct |
18106315 |
T |
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| Q |
303 |
cttcttcctgtatc--gactaattgatgtaagtgttcttct |
341 |
Q |
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||||||| ||||| |||||||||||||||| ||| |||| |
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| T |
18106314 |
cttcttcgagtatcaagactaattgatgtaagagttgttct |
18106274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 289
Target Start/End: Complemental strand, 17945829 - 17945669
Alignment:
| Q |
123 |
ttaaaggatgggtgatgatgatataatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttaccta |
222 |
Q |
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|||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||| |
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| T |
17945829 |
ttaaaggatgagtgatgatgatataatatagaat--cgctgttcacaatattattcactatattgcaagatctggttgtttacgacagcagtgttaccta |
17945732 |
T |
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| Q |
223 |
tatgtttatacaacgtacatagcaagcaatgtttgccttgtgatcactgtgcgacaaaatagtaatt |
289 |
Q |
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| T |
17945731 |
tatgtttataca----acatagcaagcaaaatctgccttgcgatcactgtgagacaaaatagtaatt |
17945669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 289
Target Start/End: Complemental strand, 19416996 - 19416873
Alignment:
| Q |
162 |
tgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgcctt |
261 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
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| T |
19416996 |
tgttcacaatattattcactatatcgcaagattgggttatttacgacagcagtgttacctatatgtttataca----acatagcaagcaaaatctgcctt |
19416901 |
T |
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| Q |
262 |
gtgatcactgtgcgacaaaatagtaatt |
289 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
19416900 |
gtgatcactgtgagacaaaatagtaatt |
19416873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 18106638 - 18106601
Alignment:
| Q |
17 |
attaactggcacacgacatactacagttcatgttccac |
54 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
18106638 |
attaactggcacacaccatactacagttcatgttccac |
18106601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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