View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_7 (Length: 348)
Name: NF10651_low_7
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_7 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 33428338 - 33428008
Alignment:
| Q |
1 |
acagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
33428338 |
acagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatgtgacgagcagaacagttatcag |
33428239 |
T |
|
| Q |
101 |
ctatgccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428238 |
ctatgccacaaacataccactttgtttcttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctg |
33428139 |
T |
|
| Q |
201 |
aaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428138 |
aaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagttgaaaactaaaaataaagaagataaaacgtaattagttcgtattagatta |
33428039 |
T |
|
| Q |
301 |
ataccagttcatctataaaagttaaaattat |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
33428038 |
ataccagttcatctataaaagttaaaattat |
33428008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 33416198 - 33416460
Alignment:
| Q |
1 |
acagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcag |
100 |
Q |
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||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33416198 |
acagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcag |
33416297 |
T |
|
| Q |
101 |
ctatgccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctg |
200 |
Q |
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| | |||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
33416298 |
caactccacaaacataccactttcttccttcagtttttagttgaatgatatcctttccggtagaaagtgcttcgttttttggtggaaaagtgcagctctg |
33416397 |
T |
|
| Q |
201 |
aaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaa |
263 |
Q |
| |
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|||| |||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
33416398 |
gaagagtgtgccattcactttaaaaacattgtgccttgaagggtcatagttgaaaactaaaaa |
33416460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 33410349 - 33410662
Alignment:
| Q |
1 |
acagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcag |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33410349 |
acagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcag |
33410448 |
T |
|
| Q |
101 |
ctatgccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctg |
200 |
Q |
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| | |||||||||||||||||| ||||||| || ||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| || || |
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| T |
33410449 |
caactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttg |
33410548 |
T |
|
| Q |
201 |
aaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagatta |
300 |
Q |
| |
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||||| |||||| || ||||||||||||||||| |||| || |||||| ||||||||||||| |||| |||| |||| ||||||||| |||||||||| |
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| T |
33410549 |
aaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttgaaaactaaaaagaaag-agatgaaacaaaattagttcatattagatta |
33410647 |
T |
|
| Q |
301 |
ataccagttcatcta |
315 |
Q |
| |
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|||| ||||||||| |
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| T |
33410648 |
atacatgttcatcta |
33410662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 33424251 - 33424564
Alignment:
| Q |
1 |
acagaatgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcag |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33424251 |
acagagtgagcatcagaagaaggtggtggagaaggagcaggtgcaccttcggctagaacagtgatgaccaacttcatttgacgagccgaacagtgatcag |
33424350 |
T |
|
| Q |
101 |
ctatgccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctg |
200 |
Q |
| |
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| | |||||||||||||||||| ||||||| || ||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| || || |
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| T |
33424351 |
caactccacaaacataccactttcttccttctgtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgcagctttg |
33424450 |
T |
|
| Q |
201 |
aaagaatgtgccgttcactttgaaaacattgtgtcttgaagggtcatagctgaaaactaaaaataaagaagataaaacgtaattagttcgtattagatta |
300 |
Q |
| |
|
||||| |||||| || ||||||||||||||||| |||| || |||||| ||||||||||||| |||||||| |||| ||||||||| |||||||||| |
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| T |
33424451 |
aaagagtgtgccatttactttgaaaacattgtgccttgccggatcatagttgaaaactaaaaa-gaagaagatgaaacaaaattagttcatattagatta |
33424549 |
T |
|
| Q |
301 |
ataccagttcatcta |
315 |
Q |
| |
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|||| ||||||||| |
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| T |
33424550 |
atacatgttcatcta |
33424564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 33436409 - 33436596
Alignment:
| Q |
7 |
tgagcatcagaagaaggtggaagagaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcagctatgc |
106 |
Q |
| |
|
||||||| |||||| || ||| | ||||||||||| || | |||||||||||||||||||| || ||||||||| |||| ||||| |||||||||| || |
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|
| T |
33436409 |
tgagcattagaagatggaggaggggaaggagcaggtgcgccttctgctagaacagtgatgacaaatttcatttgatgagcagaacaatgatcagctacgc |
33436508 |
T |
|
| Q |
107 |
cacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgca |
194 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| |||| ||||||||||| ||||| |||||||| |||| ||||||||||||||| |
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|
| T |
33436509 |
cacaaacataccactttcttccttctgtttttagttgaatgatatcctttcccgtagagagtgcttcattttttggtggaaaagtgca |
33436596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 5344 - 5181
Alignment:
| Q |
31 |
gaaggagcaggggcactttctgctagaacagtgatgatgaacttcatttgacgagccgaacagtgatcagctatgccacaaacataccactttgttcctt |
130 |
Q |
| |
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|||||||||| || | |||||||||||||||||||| ||||| |||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||| |
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| T |
5344 |
gaaggagcagatgcgccttctgctagaacagtgatgacaaactttatttgatgagcagaacaatgatcagctacgccacaaacataccactttcttcctt |
5245 |
T |
|
| Q |
131 |
cagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgca |
194 |
Q |
| |
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|||| ||||| |||| ||||||||||| |||||||||||||| |||| ||||||||||||||| |
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|
| T |
5244 |
cagtttttagttgaatgatatcctttcctgtagaaagtgcttcattttttggtggaaaagtgca |
5181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 24985177 - 24985050
Alignment:
| Q |
106 |
ccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaaga |
205 |
Q |
| |
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||||| |||||||||||| ||||||| || || || |||||| ||||||||||| ||||||||||| |||| || |||||||||||| || ||||||| |
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| T |
24985177 |
ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga |
24985078 |
T |
|
| Q |
206 |
atgtgccgttcactttgaaaacattgtg |
233 |
Q |
| |
|
| | || | ||||||||| |||||||| |
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|
| T |
24985077 |
gtttaccatccactttgaagacattgtg |
24985050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 24991007 - 24990880
Alignment:
| Q |
106 |
ccacaaacataccactttgttccttcagtctttaggggaataatatcctttccggtagaaagtgcttcgttttgtggtggaaaagtgcatctctgaaaga |
205 |
Q |
| |
|
||||| |||||||||||| ||||||| || || || |||||| ||||||||||| ||||||||||| |||| || |||||||||||| || ||||||| |
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| T |
24991007 |
ccacatacataccactttcttccttcggttttcagttgaataacgtcctttccggtggaaagtgcttcattttctgatggaaaagtgcagctttgaaaga |
24990908 |
T |
|
| Q |
206 |
atgtgccgttcactttgaaaacattgtg |
233 |
Q |
| |
|
| | || | ||||||||| |||||||| |
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|
| T |
24990907 |
gtttaccatccactttgaagacattgtg |
24990880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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