View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10651_low_8 (Length: 344)
Name: NF10651_low_8
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 1582437 - 1582691
Alignment:
| Q |
15 |
cataaacggttgaaaacttcaacagaataaaagagagattattttgcttaaaaaatgggttttccatgtcaaaaaccgtaacatacgggtccctaaataa |
114 |
Q |
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| T |
1582437 |
cataaacggttgaaaacttcaacagaataaaagagagattattttgcttaaaaaatgggttttccatgtcaaaaaccgtaacatacgggtccctaaataa |
1582536 |
T |
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| Q |
115 |
catcagataaattagttgaaatttgtttggaaaattgatttgattcacattaagcaaatgtttgtttaagcg--tttatcacatgatttggtcaaaattt |
212 |
Q |
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| T |
1582537 |
catcagataaattggttgaaatttgtttggaaaattgatttgattcacattaagcaaatgtttgtttaagtgtttttctcacatgatttggtcaaaattt |
1582636 |
T |
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| Q |
213 |
aataaccggctcataacataattacaaactaagcaattgtttacttattatcaac |
267 |
Q |
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| T |
1582637 |
aataaccggctcataacataattacaaactaagcaattgtttacttattatcaac |
1582691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 1582716 - 1582775
Alignment:
| Q |
278 |
ttgtttactttatcttcttgaatttagattttaatacttaagcaagcctctcctatgcta |
337 |
Q |
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| T |
1582716 |
ttgtttactttatcttcttgaatttagattttaatactcaagcaagcctctcctatgcta |
1582775 |
T |
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