View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10651_low_9 (Length: 323)
Name: NF10651_low_9
Description: NF10651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10651_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 52713683 - 52713975
Alignment:
| Q |
18 |
taatttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagtaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52713683 |
taatttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaac |
52713782 |
T |
|
| Q |
118 |
agatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52713783 |
agatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcg |
52713882 |
T |
|
| Q |
218 |
ctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52713883 |
ctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtct |
52713975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 52722706 - 52723002
Alignment:
| Q |
18 |
taatttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagtaac |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || ||| |
|
|
| T |
52722706 |
taatttaatcttggc-tatgagaataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaac |
52722804 |
T |
|
| Q |
118 |
agatggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
52722805 |
agatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcg |
52722904 |
T |
|
| Q |
218 |
ctcaaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtctctgct |
315 |
Q |
| |
|
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
52722905 |
ctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaactaggaaacaagttcgaaatcccaacaggttctgtccctgtctttgct |
52723002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 52699432 - 52699651
Alignment:
| Q |
41 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagtaacagatggagtgtatgcacagtgac |
140 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| |
|
|
| T |
52699432 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52699531 |
T |
|
| Q |
141 |
acaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgctcaaatgtcaaccttcttttta |
240 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||| ||| || |
|
|
| T |
52699532 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
52699631 |
T |
|
| Q |
241 |
agtcaagccagcatcatgaa |
260 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
52699632 |
agtcaagccaaaatcatgaa |
52699651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University