View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10652_low_1 (Length: 417)
Name: NF10652_low_1
Description: NF10652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10652_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 27 - 406
Target Start/End: Original strand, 44495207 - 44495580
Alignment:
| Q |
27 |
atataagtgttttagataaaatcatgaaggagaaaataaaaaattggttaagttgtatgaggaaagaggtggtgaa-gttagttagctatacactcagag |
125 |
Q |
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| T |
44495207 |
atataagtgttttagataaaatcatgaaggagaaaataaaaaattggttaagttgtatgaggaaagaatcacaccatgttagttg-------agacagag |
44495299 |
T |
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| Q |
126 |
tagcaccgctgat----actgttagtgtgaagaaatataaagatttaacaattcgtgaacctttggtcgcgacatatagcactgctcattccatattcct |
221 |
Q |
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| T |
44495300 |
tagcaccgctgattgatactgttagtgtgaagaaatataaagatttaacaattcgagaacctttggttgcgacatatagcactgctcattccatattcct |
44495399 |
T |
|
| Q |
222 |
tttatttgatattagttgacatactgctgagcaaaacaccttcaacgtgaaccttcttattcttccattgtcagagtgagtgataaaatataacccatac |
321 |
Q |
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| T |
44495400 |
tttatttgatattagttgacatactgctgagcaaaacaccttcaacgtgagcctccttattcttccattgcca----gagtgataaaatataacccatac |
44495495 |
T |
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| Q |
322 |
accataccatcaatctcattcattttgcttaaaatcactttcaaagaaaacttcacgatcctttcctgaacccagatgcattcat |
406 |
Q |
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| T |
44495496 |
accataccatcaatctcattcattttgcttaaaatcactttcaaagaaaacttcacgatcctttcctgaaaccagatgcattcat |
44495580 |
T |
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