View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10652_low_3 (Length: 285)
Name: NF10652_low_3
Description: NF10652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10652_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 37242385 - 37242647
Alignment:
| Q |
9 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtac |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37242385 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatggtcctacaatagcttatgagaaggaacaatgggagaagccttcaatttacaaagtac |
37242484 |
T |
|
| Q |
109 |
cctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaatttaaagcttatggaaaa |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37242485 |
cctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggaaaatttaaagcttatggaaaa |
37242584 |
T |
|
| Q |
209 |
gcataagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttatt |
271 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242585 |
gcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttatt |
37242647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 36 - 270
Target Start/End: Original strand, 37964659 - 37964893
Alignment:
| Q |
36 |
gagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtaccctcacaagtcacggagttgaacaaaa |
135 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
37964659 |
gagatcaagaacaatggtccttcaatagctgatgagaaggaacaatgggagaagccttcaatttacaaagtaccatcacaagtcacggatttgaacaaaa |
37964758 |
T |
|
| Q |
136 |
atgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaatttaaagcttatggaaaagcataagcatcgagccctccttcattt |
235 |
Q |
| |
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| |||| ||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||| || ||| ||| |
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| T |
37964759 |
aggcctacaaaccacaagtaatttcctttggtccttaccataatggggaggagaatttaaagcttatggaagagcacaaatatcgagcgcttgttcgttt |
37964858 |
T |
|
| Q |
236 |
tttaaagaggtgtggaaagcccgttgagttgttat |
270 |
Q |
| |
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||||||||||||| |||| || |||||||||||| |
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| T |
37964859 |
cttaaagaggtgtgaaaagtccattgagttgttat |
37964893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 37304465 - 37304702
Alignment:
| Q |
9 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtac |
108 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37304465 |
atgaagcggcttgatcaaatcaatgaagagatcaagaacaatggtcctacaatagctgatgagaaggaacaatgggagaagccttcaatttacaaagtac |
37304564 |
T |
|
| Q |
109 |
cctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaatttaaagct--tatggaa |
206 |
Q |
| |
|
|||||||| |||||||| |||| || || |||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||| || | ||||||| |
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| T |
37304565 |
cctcacaactcacggagctgaaaaagaaggcctacaaaccacaagcaatttcatttggtccttaacattatggagaggagaatttacagtttatatggaa |
37304664 |
T |
|
| Q |
207 |
aagcataagcatcgagccctccttcattttttaaagag |
244 |
Q |
| |
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|||| |||||| ||||||| ||| ||| |||||||| |
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| T |
37304665 |
gagcacaagcatagagcccttgttcgtttcttaaagag |
37304702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 37273088 - 37273330
Alignment:
| Q |
9 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtac |
108 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||||||| | |||| |||| || |||||| |||||||||| |||| | ||||||||||||||||| |
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|
| T |
37273088 |
atgaattggcttgatgaaatcaatgaggagatcgagaacaacgttccttcaattgccaatgagagagaacaatggaagaaacattcaatttacaaagtac |
37273187 |
T |
|
| Q |
109 |
cctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaatttaaagcttatggaaaa |
208 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||| |||| ||||||||| ||||| ||||||||||||||| ||||| ||||||||| ||||||| | |
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|
| T |
37273188 |
cctcacaactcacggagttgaacgaaaaagcctacgtgccccgagcaatttcatttggaccttaccattatgggaaggagcatttaaagcctatggaaga |
37273287 |
T |
|
| Q |
209 |
gcataagcatcgagccctccttcattttttaaagaggtgtgga |
251 |
Q |
| |
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||| ||||||||||| || |||||||| |||||||||||||| |
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| T |
37273288 |
gcacaagcatcgagctcttcttcatttcctaaagaggtgtgga |
37273330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 37317547 - 37317797
Alignment:
| Q |
21 |
gatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtaccctcacaagtca |
120 |
Q |
| |
|
|||||||||||| | || || |||| ||||| |||| ||| | ||||||||| |||| |||| |||| | ||||||||||||| |||| ||| ||| | |
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| T |
37317547 |
gatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacattcaatttacaaaataccttcaagagtaa |
37317646 |
T |
|
| Q |
121 |
cggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaatttaaagcttatggaaaagcataagcatcg |
220 |
Q |
| |
|
| | | |||||||| |||| ||||| ||||||||||| ||||||||||| |||||||||||||| |||| | | ||||||| | || |||||| | |
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|
| T |
37317647 |
ctgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatag |
37317746 |
T |
|
| Q |
221 |
agccctccttcattttttaaagaggtgtggaaagcccgttgagttgttatt |
271 |
Q |
| |
|
||| || |||||||| |||| |||||||| |||||| ||||||||||||| |
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| T |
37317747 |
agctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttatt |
37317797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 24014252 - 24014136
Alignment:
| Q |
25 |
aaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtaccctcacaagtcacgga |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||| |||| | ||| |||||| || | | |||||| ||||||||||||||||||||||| | |
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| T |
24014252 |
aaatcaatgaggagatcaagaccaatgctccttcagaagctaatgacatagatcaatggaaggaacattcaatctacaaagtaccctcacaagtcacaaa |
24014153 |
T |
|
| Q |
125 |
gttgaacaaaaatgcct |
141 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
24014152 |
gttgaacaaaaaggcct |
24014136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 32034485 - 32034610
Alignment:
| Q |
9 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtac |
108 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||||||||||||| || |||| ||| | ||| |||||| |||| | |||||||| ||||||| |
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| T |
32034485 |
atgaagtggactgataaaatcaatgaggaggtcaagaacaatgctccttcataagctaatggcatagatcaatggaagaaacattcaatttgtaaagtac |
32034584 |
T |
|
| Q |
109 |
cctcacaagtcacggagttgaacaaaaa |
136 |
Q |
| |
|
|||||||||||| | |||||||||||| |
|
|
| T |
32034585 |
cctcacaagtca--gtgttgaacaaaaa |
32034610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 16573542 - 16573358
Alignment:
| Q |
9 |
atgaagtggcttgatcaaatcaatgaggagatcaagaacaatgctcctacaatagctgatgagaaagaacaatgggagaagccttcaatttacaaagtac |
108 |
Q |
| |
|
||||||||| | ||| |||||||||||||||| || |||| | || ||||| ||||||||| ||| ||||| |||||| ||| ||||||||||||| |
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|
| T |
16573542 |
atgaagtgggtggataaaatcaatgaggagattaacaacagctgttcttcaatacctgatgagattgaaaaatggaagaagcgttccatttacaaagtac |
16573443 |
T |
|
| Q |
109 |
cctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggagaattt |
193 |
Q |
| |
|
|||||| | | |||| | |||||||||| || ||||| ||| |||||| ||||||||||| ||| |||| |||||| |||| |
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|
| T |
16573442 |
cctcacggctgaaggagctaaacaaaaatgtctacaaaccacaaaaaatttcgtttggtccttatcatcatggtgaggagcattt |
16573358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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