View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10652_low_5 (Length: 250)

Name: NF10652_low_5
Description: NF10652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10652_low_5
NF10652_low_5
[»] chr6 (5 HSPs)
chr6 (4-174)||(8990459-8990629)
chr6 (4-174)||(9014906-9015076)
chr6 (4-174)||(14720262-14720433)
chr6 (171-240)||(11643850-11643919)
chr6 (171-240)||(24690536-24690605)
[»] chr8 (2 HSPs)
chr8 (135-240)||(14996524-14996629)
chr8 (186-240)||(29714658-29714712)
[»] chr1 (3 HSPs)
chr1 (171-240)||(22683242-22683311)
chr1 (171-240)||(10824546-10824615)
chr1 (209-237)||(19056330-19056358)
[»] chr2 (3 HSPs)
chr2 (186-240)||(16973180-16973234)
chr2 (209-238)||(2916516-2916545)
chr2 (171-240)||(38982734-38982803)
[»] chr7 (2 HSPs)
chr7 (171-240)||(6474458-6474527)
chr7 (210-240)||(41986087-41986117)
[»] chr3 (1 HSPs)
chr3 (171-240)||(51663351-51663420)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 8990629 - 8990459
Alignment:
Q  4 ctaaggctggtatatgttgagcagacttagcttggcaaccaaattattgaaacttgccggatgcagtgcctttgtcaagatatctataatctgctcttga 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  8990629 ctaaggctggtatatgttgagcagacttagcttggcaatcaaatgattgaaacttgccggatgcagcgcctttgtcaagatatctgcaatctgctcttga 8990530  T
Q  104 ttggagatggggaacaattccatgagtccactttgaagtttctccctcaccacatgacaatcaatatctag 174  Q
     | ||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  8990529 ctagagataggaaacaattccatgagtccactttgaagtttctccctcactacatggcaatcaatatctag 8990459  T

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Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 9015076 - 9014906
Alignment:
Q  4 ctaaggctggtatatgttgagcagacttagcttggcaaccaaattattgaaacttgccggatgcagtgcctttgtcaagatatctataatctgctcttga 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  9015076 ctaaggctggtatatgttgagcagacttagcttggcaatcaaatgattgaaacttgccggatgcagcgcctttgtcaagatatctgcaatctgctcttga 9014977  T
Q  104 ttggagatggggaacaattccatgagtccactttgaagtttctccctcaccacatgacaatcaatatctag 174  Q
     | ||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9014976 ctagagataggaaacaattccatgagtccactttgaagtttctccctcactacatggcaatcaatatctag 9014906  T

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Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 14720433 - 14720262
Alignment:
Q  4 ctaaggctggtatatgttgagcagacttagcttggcaaccaaattattgaaacttgccggatgcagtgcctttgtcaagatatctataatctgctcttga 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  14720433 ctaaggctggtatatgttgagcagacttagcttggcaatcaaatgattgaaacttgccggatgcagcgcctttgtcaagatatctgcaatctgctcttga 14720334  T
Q  104 ttggagatggggaacaattccatgagtccactttgaagtttctccctcaccaca-tgacaatcaatatctag 174  Q
     | ||||| || |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  14720333 ctagagataggaaacaattccatgagtccactttgaagtttctccctcactacattggcaatcaatatctag 14720262  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 11643850 - 11643919
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  11643850 ctagttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 24690605 - 24690536
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||||| ||| ||| ||||||||       ||||||||||||||||||||||||| ||||||    
T  24690605 ctagttttagtcctttctattaatttctctcaaaaaaacgttaacttatgtaccaatttggtctcctatg 24690536  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 14996524 - 14996629
Alignment:
Q  135 tttgaagtttctccctcaccacatgacaatcaatatctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcc 234  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||    
T  14996524 tttgaagtttctccctcaccacattacaatcaacatctagtttttgtcctctctgttagtttctctcaaaaaaacgttaacttatgtactaatttggtcc 14996623  T
Q  235 cctatg 240  Q
    ||||||    
T  14996624 cctatg 14996629  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 29714658 - 29714712
Alignment:
Q  186 tctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    ||||||||||||||||       ||||||||||||||||||||||||| ||||||    
T  29714658 tctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatg 29714712  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 22683242 - 22683311
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  22683242 ctagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 10824615 - 10824546
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||||| |||  |||||||||||       |||||||||||||||||||||| |||||||||    
T  10824615 ctagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatg 10824546  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 19056358 - 19056330
Alignment:
Q  209 cgttaacttatgtaccaatttggtcccct 237  Q
    |||||||||||||||||||||||||||||    
T  19056358 cgttaacttatgtaccaatttggtcccct 19056330  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 16973180 - 16973234
Alignment:
Q  186 tctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  16973180 tctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 2916516 - 2916545
Alignment:
Q  209 cgttaacttatgtaccaatttggtccccta 238  Q
    ||||||||||||||||||||||||||||||    
T  2916516 cgttaacttatgtaccaatttggtccccta 2916545  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 38982803 - 38982734
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||| | |||| |||||||||||       ||||||||||||||||||||||||||| ||||    
T  38982803 ctagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 38982734  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 6474527 - 6474458
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||||| | ||||||||||||||       ||||||||||||||||||||||||||| ||||    
T  6474527 ctagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 6474458  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 41986117 - 41986087
Alignment:
Q  210 gttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||||||||||||||||||||||||||    
T  41986117 gttaacttatgtaccaatttggtcccctatg 41986087  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 51663351 - 51663420
Alignment:
Q  171 ctagtttttgtcctctctgttagtttctctcnnnnnnncgttaacttatgtaccaatttggtcccctatg 240  Q
    |||||||| ||| | |||| |||||||||||       ||||||||||||||| ||||||||||||||||    
T  51663351 ctagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

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