View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10652_low_8 (Length: 213)
Name: NF10652_low_8
Description: NF10652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10652_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 26783076 - 26782891
Alignment:
| Q |
13 |
catagggtttatgtgtcctcttgatgggtatggaaccactaacacatggctcatggttagggttttgggtgattttggatcttgaagttgaaactccatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26783076 |
catagggtttatgtgtcctcttgatgggtatggaaccactaacacatggctcatggttagggttttgggtgattttggatcttgaagttgaaactccatg |
26782977 |
T |
|
| Q |
113 |
aaatggaatttgaaggaaacaaatgaatggtggtagttttggtttggttttgtgtatgaattaatgtgtggttttctagtacaatg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26782976 |
aaatggaatttgaaggaaacaaatgaatggtggtagttttggtttggttttgtgtatgaattaatgtgtggttttctagtacaatg |
26782891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 26762113 - 26762018
Alignment:
| Q |
17 |
gggtttatgtgtcctcttgatgggtatggaaccactaacacatggctcatggttagggttttgggtgattttggatcttgaagttgaaactccatg |
112 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||||||||||||||||| | || ||| ||||||| ||| |||||||| ||||||||||| |
|
|
| T |
26762113 |
gggttgatgtgtccacgtgatgggtatggaaccactaacacatggctcatgatggtggcttttggtgattgtgggtcttgaagaggaaactccatg |
26762018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University