View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10653_1 (Length: 538)
Name: NF10653_1
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10653_1 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 33 - 530
Target Start/End: Complemental strand, 33287362 - 33286868
Alignment:
| Q |
33 |
ggagtctcaacagacaaatgtggttaacaaattttggtcaaaggtggagagtttgtttctcaccaagatgaataataatgatacaacagagagtgtaaaa |
132 |
Q |
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|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33287362 |
ggagtctcaaaagccaaatgtggttaacaaattttggacaaaggtggagagtttgtttctcaccaagatgaataataatgatacaacagacagtgtaaaa |
33287263 |
T |
|
| Q |
133 |
caacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacagcgt |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||||||||| || |
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| T |
33287262 |
caacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaaggttctattgtgattgctgttggccatggtactacagtgt |
33287163 |
T |
|
| Q |
233 |
cgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttggacatgcatttaatgaacatcatgataagaaggttgctccttt |
332 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
33287162 |
cgaaaacagtgtccgagtttgacaaatggaaagaagtggcaattaaaaagggctttgaacatgcatttaatgaacatc---ataagaaggttgctccttc |
33287066 |
T |
|
| Q |
333 |
ctttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttatt |
432 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33287065 |
ctttcatctttgctctcaccttgagattcataaagttgctggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttatt |
33286966 |
T |
|
| Q |
433 |
acctacaagtgttgccatgatgaggataagacttattaatggtgagcattagcattggagtgttgctatgtgttatgttcaattgttgcatattcttc |
530 |
Q |
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| T |
33286965 |
acctacaagtgttgccatgatgaggataagacttattaatggtgagcattagcattggagtgttgctatgtgttatgttcaattgttgcattttcttc |
33286868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 33 - 450
Target Start/End: Original strand, 33140750 - 33141158
Alignment:
| Q |
33 |
ggagtctcaacagacaaatgtggttaacaaattttggtcaaaggtggagagtttgtttctcaccaagatgaataataatgatacaacagagagtgtaaaa |
132 |
Q |
| |
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||||||||||||| |||||||||||||||| || ||| |||||| || ||||||||| | ||||||||| || | || |||| | | ||||| | |
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| T |
33140750 |
ggagtctcaacagccaaatgtggttaacaacttctggaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaa------aacaaacactgtaaca |
33140843 |
T |
|
| Q |
133 |
caacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacagcgt |
232 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||| ||| | |
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| T |
33140844 |
caacaggttgagaaattgctttcttacaagaatgagactgggtgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggacttcagttt |
33140943 |
T |
|
| Q |
233 |
cgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttggacatgcatttaatgaacatcatgataagaaggttgctccttt |
332 |
Q |
| |
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||| |||||| |||||||||||||||||||| ||||| || || || ||||||| | ||||||| ||||||| || | ||||||||| | |
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| T |
33140944 |
tgaagacagtgtccgagtttgacaaatggaaagatgtggcgatcaataaaggctttgaattcgcatttagagaacatc---atcacaaggttgctagtac |
33141040 |
T |
|
| Q |
333 |
ctttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttatt |
432 |
Q |
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| ||||| ||||||||| ||||||||||| ||| |||| ||| ||||| ||||||||| | |||||||||||||||| |||| |||||||||||||||| |
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| T |
33141041 |
cgttcatatttgctctcaccttgagattcctaatgttgctgggaaaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttatt |
33141140 |
T |
|
| Q |
433 |
acctacaagtgttgccat |
450 |
Q |
| |
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| |||||||||||||||| |
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| T |
33141141 |
agctacaagtgttgccat |
33141158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 132 - 450
Target Start/End: Original strand, 33182307 - 33182622
Alignment:
| Q |
132 |
acaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacagcg |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||| |||||| | |||||| ||||| ||||||| |
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| T |
33182307 |
acaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtcatgggactacagtt |
33182406 |
T |
|
| Q |
232 |
tcgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttggacatgcatttaatgaacatcatgataagaaggttgctcctt |
331 |
Q |
| |
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| ||| ||| | | |||||||| || |||||||| | | | | |||||||||| ||| |||||| || ||||| | | || ||||| || |
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| T |
33182407 |
ttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaagggctttgaacactcatttagagagtatcataacacga---ttgctagtt |
33182503 |
T |
|
| Q |
332 |
tctttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttat |
431 |
Q |
| |
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||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
33182504 |
ctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatat |
33182603 |
T |
|
| Q |
432 |
tacctacaagtgttgccat |
450 |
Q |
| |
|
| ||||||||| |||||| |
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| T |
33182604 |
cagctacaagtgctgccat |
33182622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 450
Target Start/End: Original strand, 33159463 - 33159778
Alignment:
| Q |
132 |
acaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacagcg |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||| |||||| | |||||| ||||| ||||||| |
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|
| T |
33159463 |
acaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtcatgggactacagtt |
33159562 |
T |
|
| Q |
232 |
tcgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttggacatgcatttaatgaacatcatgataagaaggttgctcctt |
331 |
Q |
| |
|
| ||| ||| | | |||||||| || |||||||| | | | | |||||||||| | | |||||| || ||||| | | || ||||| || |
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|
| T |
33159563 |
ttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaagggctttgaatactcatttagagagtatcataacacga---ttgctagtt |
33159659 |
T |
|
| Q |
332 |
tctttcatctttgctctcgccttgagattcataaagttgatggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttat |
431 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| ||| || ||||||||||||||| |||| ||||||||||| ||| |
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|
| T |
33159660 |
ctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatat |
33159759 |
T |
|
| Q |
432 |
tacctacaagtgttgccat |
450 |
Q |
| |
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| ||||||||| |||||| |
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| T |
33159760 |
cagctacaagtgctgccat |
33159778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 33159370 - 33159439
Alignment:
| Q |
33 |
ggagtctcaacagacaaatgtggttaacaaattttggtcaaaggtggagagtttgtttctcaccaagatg |
102 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||| |||||||||||| | ||||||||| |
|
|
| T |
33159370 |
ggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagagagtttgtttgtgaccaagatg |
33159439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 33182214 - 33182283
Alignment:
| Q |
33 |
ggagtctcaacagacaaatgtggttaacaaattttggtcaaaggtggagagtttgtttctcaccaagatg |
102 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||| |||||||||||| | ||||||||| |
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|
| T |
33182214 |
ggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagagagtttgtttgtgaccaagatg |
33182283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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