View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10653_10 (Length: 315)
Name: NF10653_10
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10653_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0331 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1339268 - 1339582
Alignment:
| Q |
1 |
ttattgcctgcattatgaaagtacccagatcacattgattagaactttacaatcacaaagtgggttccttatctaagaaaagggcacaaacatctctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339268 |
ttattgcctgcattatgaaagtacccagatcacattgattagaactttacaatcacaacatgggttccttatctaagaaaagggcacaaacatctctatt |
1339367 |
T |
|
| Q |
101 |
tctatcatttcttacttcaaactcagtagggatgacggatctggattcaacctcatgagttggtaacggatacgagggtaatttcttcaaacagaaaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1339368 |
tctatcatttcttacttcaaactcaatagggatgacggatctggattcaacctcatgagttggtaacggatacgagggtaatttctacaaacagaaaagt |
1339467 |
T |
|
| Q |
201 |
cgataaatcattagccttccattttaaaacatttagagagtaacttaaataacacaacaaattaaaaatctagtactaagcaacagccttacttcagtag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1339468 |
cgataaatcattagccttccattttaaaacatttagagagtaacttaaataacacaacaaattaaaaatctagtactaagcaacagccttacttcagtag |
1339567 |
T |
|
| Q |
301 |
ttagagctccccaaa |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1339568 |
ttagagctccccaaa |
1339582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 31941110 - 31941421
Alignment:
| Q |
7 |
cctgcattatgaaagtacccagatcacattgattagaactttacaatcacaaagtgggttccttatctaagaaaagggcacaaacatctctatttctatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
31941110 |
cctgcattatgaaagtacccagatcacattgattagaactttactatcacaatatgggttccttgtctaagaaaaaggcacaaacatctctatttttatc |
31941209 |
T |
|
| Q |
107 |
atttcttacttcaaactcagtagggatgacggatctggattcaacctcatgagttggtaacggatacgagggtaatttcttcaaacagaaaag-tcgata |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||||||||| | ||||||||| | |||| |
|
|
| T |
31941210 |
agttcttacttcaaactcagtagggatgactgatctcgatacaacctcatgagttggtaacggatatgacggtaatttctacggacagaaaagatggata |
31941309 |
T |
|
| Q |
206 |
aatcattagccttccattttaaaacatttagagagtaacttaaataacacaacaaattaaaaatctagtac--taagcaacagccttacttcagtagtta |
303 |
Q |
| |
|
|||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||| | | |
|
|
| T |
31941310 |
aatcattaaccttccatttaaaaatatttacagagtaacttaaataacacaacaaaataaaaaactagtactataagcaatggccttacttcagtggcaa |
31941409 |
T |
|
| Q |
304 |
gagctccccaaa |
315 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31941410 |
gagctccccaaa |
31941421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 9391446 - 9391756
Alignment:
| Q |
7 |
cctgcattatgaaagtacccagatcacattgattagaactttacaatcacaaagtgggttccttatctaagaaaagggcacaaacatctctatttctatc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
9391446 |
cctgcattatgaaagtacccagatcacattgattagaactttactatcacagcatgggttccttgtctaagaaaaaggcacaaacatctctatttctatc |
9391545 |
T |
|
| Q |
107 |
atttcttacttcaaactcagtagggatgacggatctggattcaacctcatgagttggtaacggatacgagggtaatttcttcaaacagaaaagtcgataa |
206 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||| ||| |||||| |||||||||||||||||| || |||||||||| |||||||||||| ||||| |
|
|
| T |
9391546 |
agttcttacttcaaactcagttgggatgactgatctcgatacaaccttatgagttggtaacggatatgacggtaatttctacaaacagaaaagatgataa |
9391645 |
T |
|
| Q |
207 |
atcattagccttccattttaaaacatttagagagtaacttaaataacacaacaaattaaaaatctagtac--taagcaacagccttacttcagtagttag |
304 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||| | ||||| |||| || ||||||||||||| | || |
|
|
| T |
9391646 |
atcattaaccttccatttaaaaatatttagagagtaacttaaataacacaacaaaataaaaaacaagtactataagaaatggccttacttcagtggcaag |
9391745 |
T |
|
| Q |
305 |
agctccccaaa |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
9391746 |
agctccccaaa |
9391756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0331 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 2392 - 2273
Alignment:
| Q |
7 |
cctgcattatgaaagtacccagatcacattgattagaactttacaatcacaaagtgggttccttatctaagaaaagggcacaaacatctctatttctatc |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
2392 |
cctgcattatgaaagtacccaaatcacattgattagaactttactatcacaacatgggttccttgtctaaggaaaggccacaaacatctctatttctatc |
2293 |
T |
|
| Q |
107 |
atttcttacttcaaactcag |
126 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
2292 |
aattcttccttcaaactcag |
2273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 5641150 - 5641421
Alignment:
| Q |
7 |
cctgcattatgaaagtacccagatcacattgattagaactttacaatcacaaagtgggttccttatctaagaaaagggcacaaacatctctatttctatc |
106 |
Q |
| |
|
|||||||||||| | || |||||||||||||||| |||||| |||| |||| |||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5641150 |
cctgcattatgacaatagacagatcacattgattaaaactttgcaattacaa----tgttctttatctaagaaaaagttacaaacatctctatttctatc |
5641245 |
T |
|
| Q |
107 |
atttcttacttcaaactcagtagggatgacggatctggattcaacctcatgagttggtaacggatacgagggtaatttcttcaaacagaaaagtcgat-- |
204 |
Q |
| |
|
| |||||||||||||||| | ||||| || ||||| ||| ||||||||||||||||| |||||| || ||||| |||| ||||||||| ||| || |
|
|
| T |
5641246 |
agttcttacttcaaactccttggggataacagatctcgatataacctcatgagttggtagcggatatgaaggtaaattctacaaacagaagagtatataa |
5641345 |
T |
|
| Q |
205 |
----aaatcattagccttccattttaaaacatttagagagtaacttaaataacacaacaaattaaaaatctagtact |
277 |
Q |
| |
|
||||||||| | ||| || || ||||||||||||| |||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
5641346 |
atacaaatcattaacattcaatatt-aaacatttagagaccaacttagataacacatcaaaataaaaatttagtact |
5641421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University