View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10653_2 (Length: 444)

Name: NF10653_2
Description: NF10653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10653_2
NF10653_2
[»] chr4 (49 HSPs)
chr4 (1-432)||(37826569-37827006)
chr4 (7-369)||(48852741-48853100)
chr4 (251-382)||(7790381-7790512)
chr4 (249-369)||(7773467-7773587)
chr4 (314-381)||(48864399-48864466)
chr4 (254-368)||(7237386-7237500)
chr4 (251-369)||(7771696-7771814)
chr4 (249-382)||(45365849-45365982)
chr4 (249-369)||(7765941-7766061)
chr4 (314-366)||(48147358-48147410)
chr4 (314-382)||(49043797-49043865)
chr4 (314-369)||(49038520-49038575)
chr4 (7-70)||(49048516-49048579)
chr4 (305-382)||(45371703-45371780)
chr4 (305-369)||(7908657-7908721)
chr4 (10-69)||(45372013-45372072)
chr4 (299-369)||(7878732-7878802)
chr4 (256-359)||(48903264-48903364)
chr4 (249-369)||(7786763-7786883)
chr4 (314-382)||(45384521-45384589)
chr4 (314-382)||(48156058-48156126)
chr4 (249-369)||(48870859-48870979)
chr4 (249-369)||(48876163-48876283)
chr4 (249-369)||(48886545-48886665)
chr4 (317-385)||(50666682-50666750)
chr4 (314-369)||(7813841-7813896)
chr4 (7-206)||(49043994-49044193)
chr4 (9-69)||(7765701-7765761)
chr4 (314-369)||(7801001-7801056)
chr4 (314-369)||(49048197-49048252)
chr4 (249-287)||(7878045-7878083)
chr4 (118-200)||(48705193-48705275)
chr4 (314-360)||(50672862-50672908)
chr4 (169-281)||(50669301-50669416)
chr4 (9-69)||(7786523-7786583)
chr4 (169-209)||(48898959-48898999)
chr4 (15-66)||(48891495-48891546)
chr4 (305-359)||(48861643-48861697)
chr4 (314-428)||(50669446-50669560)
chr4 (7-64)||(7790140-7790197)
chr4 (11-64)||(7908398-7908451)
chr4 (182-283)||(43596153-43596254)
chr4 (8-69)||(45384830-45384891)
chr4 (321-362)||(48734174-48734215)
chr4 (7-59)||(7237695-7237747)
chr4 (7-59)||(7771455-7771507)
chr4 (11-67)||(7877807-7877863)
chr4 (8-60)||(48705330-48705382)
chr4 (324-364)||(48735058-48735098)
[»] chr8 (8 HSPs)
chr8 (167-368)||(12200559-12200760)
chr8 (167-368)||(12444987-12445188)
chr8 (167-368)||(12195541-12195742)
chr8 (167-368)||(12439969-12440170)
chr8 (167-366)||(4962161-4962367)
chr8 (314-360)||(4031577-4031623)
chr8 (167-385)||(15349100-15349318)
chr8 (306-363)||(41311005-41311062)
[»] chr3 (5 HSPs)
chr3 (167-368)||(11005571-11005766)
chr3 (217-382)||(47451529-47451694)
chr3 (102-368)||(11024146-11024406)
chr3 (98-368)||(11015134-11015398)
chr3 (7-60)||(11024469-11024522)
[»] chr5 (6 HSPs)
chr5 (316-432)||(42561912-42562028)
chr5 (254-369)||(9120067-9120182)
chr5 (256-354)||(179364-179462)
chr5 (13-69)||(179112-179168)
chr5 (314-365)||(29688493-29688544)
chr5 (314-368)||(29696600-29696654)
[»] chr6 (5 HSPs)
chr6 (314-366)||(21016185-21016237)
chr6 (167-361)||(21979278-21979475)
chr6 (11-68)||(21979577-21979634)
chr6 (317-357)||(14197337-14197377)
chr6 (7-67)||(21015884-21015944)
[»] chr1 (6 HSPs)
chr1 (305-369)||(24367520-24367584)
chr1 (316-369)||(24310582-24310635)
chr1 (319-432)||(24340780-24340893)
chr1 (319-432)||(24353145-24353258)
chr1 (316-369)||(24416144-24416197)
chr1 (319-369)||(24323139-24323189)
[»] chr7 (4 HSPs)
chr7 (314-369)||(48884188-48884243)
chr7 (167-209)||(48884047-48884089)
chr7 (306-367)||(30165853-30165914)
chr7 (9-61)||(48883881-48883933)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 37827006 - 37826569
Alignment:
Q  1 acaaggtcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcacaccgcatataggaatggcttttataatgcca 100  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37827006 acaaggtcatcacatttggagtttttctcgttgaaagataattcatggagagaaattgagggtactcacaccgcatataggaatggcttttataatgcca 37826907  T
Q  101 aagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826906 aagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaact 37826807  T
Q  201 gttagagatacccgtt------ccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggc 294  Q
    ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37826806 gttagagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggc 37826707  T
Q  295 agttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatgccattccca 394  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37826706 agttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcggattgatgatgccattccca 37826607  T
Q  395 atttttaccctctatgttctacaaaaagtggtgatatt 432  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37826606 atttttaccctctatgttctacaaaaagtggtgatatt 37826569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 48852741 - 48853100
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcacaccgcatataggaatggcttttataatgccaaagtag 106  Q
    ||||||||||| ||||||||||| |||| || |||| |||||| |||||||||||||||||||  | | || | ||||| ||   || || ||| |||||    
T  48852741 tcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgagggtactcacttcccttacatgaatgcctccgatgatcccagagtag 48852840  T
Q  107 ggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatc---ttattgttgcctttaatttaatggaaaggaaactgtt 203  Q
    |||| || || |||||||| |||||||||||  ||| ||||| ||||| |||| || ||    ||||||| |||||| ||||||||||||||||||| ||    
T  48852841 ggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaactttt 48852940  T
Q  204 agagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataat 303  Q
    |||| |  |  | || ||||||||| || |||| ||| | ||||  | ||||||||||||| |||||||||| ||| |||||| ||||||        ||    
T  48852941 agagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatggggg------at 48853034  T
Q  304 catacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
     ||||| || |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  48853035 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 48853100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 7790381 - 7790512
Alignment:
Q  251 gtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtc 350  Q
    ||||||||||||||||||||||||| ||| |||| || | ||    | ||||| ||||| || |||||||||||||||||||||||||| ||||||||||    
T  7790381 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7790480  T
Q  351 ttggactaagactcttgttgttcgtattgatg 382  Q
    ||||||||| ||||||||| ||  ||||||||    
T  7790481 ttggactaaaactcttgttctttctattgatg 7790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 7773587 - 7773467
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    ||||||||||||||||||||||| ||||||| ||||||| | ||  | |  |||| ||||| || |||||||||||||||||||||||||| ||||||||    
T  7773587 tggtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcg 7773488  T
Q  349 tcttggactaagactcttgtt 369  Q
    ||||||| |||  ||||||||    
T  7773487 tcttggattaaatctcttgtt 7773467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 48864399 - 48864466
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgat 381  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||    
T  48864399 aaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttcttcctattgat 48864466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 7237500 - 7237386
Alignment:
Q  254 tgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttg 353  Q
    |||||||||||||||||||||| |||||||||||   ||    | ||||| ||||| ||  ||||||||||||||||||||||||| ||||||||| |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  354 gactaagactcttgt 368  Q
    |||||| ||||||||    
T  7237400 gactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 7771696 - 7771814
Alignment:
Q  251 gtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtc 350  Q
    ||||||||||||||||||||||||| ||| |||| || | ||    | ||||| ||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  7771696 gtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtc 7771795  T
Q  351 ttggactaagactcttgtt 369  Q
     |||||||| |||||||||    
T  7771796 atggactaaaactcttgtt 7771814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 382
Target Start/End: Complemental strand, 45365982 - 45365849
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    ||||||||||||||||||||||||| | ||| | ||||| ||||    | ||||| ||||| || |||||||||||||||||||||| ||| ||| ||||    
T  45365982 tggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcg 45365883  T
Q  349 tcttggactaagactcttgttgttcgtattgatg 382  Q
    |||||||| |||||||  ||| ||| ||||||||    
T  45365882 tcttggacaaagactcacgttcttcctattgatg 45365849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 7765941 - 7766061
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    |||||||||||||| |||||||||||| ||| ||||||  | ||  | |  |||| ||||| || |||||||||||||||||||||||||| || |||||    
T  7765941 tggtttgtgggtatctggagaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcg 7766040  T
Q  349 tcttggactaagactcttgtt 369  Q
    || ||||||||||| ||||||    
T  7766041 tcatggactaagacacttgtt 7766061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 48147410 - 48147358
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48147410 aaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 49043865 - 49043797
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatg 382  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||  ||||||||    
T  49043865 aaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatg 49043797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 49038575 - 49038520
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  49038575 aaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgtt 49038520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 49048579 - 49048516
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcaca 70  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||    
T  49048579 tcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgagggtactcaca 49048516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 45371780 - 45371703
Alignment:
Q  305 atacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatg 382  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||    
T  45371780 atacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatg 45371703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 7908657 - 7908721
Alignment:
Q  305 atacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    |||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||    
T  7908657 atacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgtt 7908721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 45372072 - 45372013
Alignment:
Q  10 tcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcac 69  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||    
T  45372072 tcacatttggagtttttctcattgagagataatacttggagagaacttgagggtactcac 45372013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 369
Target Start/End: Original strand, 7878732 - 7878802
Alignment:
Q  299 ataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||||    
T  7878732 ataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgtt 7878802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 48903264 - 48903364
Alignment:
Q  256 tgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttgga 355  Q
    ||||||||||||||||||||||| ||||||||  |||    |||  || ||| | || |||||||||||||||||||||||||| |||||| ||||||||    
T  48903264 tgggtatttggagaatttcttagcctatgggctttgga---ttacgataataaatttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttgga 48903360  T
Q  356 ctaa 359  Q
    ||||    
T  48903361 ctaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 7786763 - 7786883
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    |||||||||||||| ||| |||||||| ||| ||||||  | ||  | |  |||| ||||| || |||||||||||||||||||||||||  ||||||      
T  7786763 tggtttgtgggtatctggggaatttctcagtatatgggttaaggatactactaatgatacaattgaaatatgggtgatgaaagaatacaacgtgcattta 7786862  T
Q  349 tcttggactaagactcttgtt 369  Q
    ||||||| |||||||||||||    
T  7786863 tcttggaataagactcttgtt 7786883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 45384589 - 45384521
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatg 382  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||| ||| | ||||||    
T  45384589 aaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttcttccttttgatg 45384521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 48156126 - 48156058
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatg 382  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||  ||| ||||||||    
T  48156126 aaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgtccttcctattgatg 48156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 48870859 - 48870979
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    |||||||||||||||||| |||||||| |||||||  || ||||    | || || ||||| || |||| ||||||||||| ||||||||| || | |||    
T  48870859 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48870958  T
Q  349 tcttggactaagactcttgtt 369  Q
    |||||||| ||||||||||||    
T  48870959 tcttggacaaagactcttgtt 48870979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 48876163 - 48876283
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    |||||||||||||||||| |||||||| |||||||  || ||||    | || || ||||| || |||| ||||||||||| ||||||||| || | |||    
T  48876163 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48876262  T
Q  349 tcttggactaagactcttgtt 369  Q
    |||||||| ||||||||||||    
T  48876263 tcttggacaaagactcttgtt 48876283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 48886545 - 48886665
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcg 348  Q
    |||||||||||||||||| |||||||| |||||||  || ||||    | || || ||||| || |||| ||||||||||| ||||||||| || | |||    
T  48886545 tggtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcg 48886644  T
Q  349 tcttggactaagactcttgtt 369  Q
    |||||||| ||||||||||||    
T  48886645 tcttggacaaagactcttgtt 48886665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 50666682 - 50666750
Alignment:
Q  317 tatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatg 385  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||| |||  ||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgttattcacattgatgatg 50666750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 7813841 - 7813896
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  7813841 aaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgtt 7813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 49044193 - 49043994
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcacaccgcatataggaatggcttttataatgccaaagtag 106  Q
    |||| |||||||||||||||||| |||| |||||||| |||||  |||||||||| |||| ||  | | ||||  ||   || | || || |||  ||||    
T  49044193 tcattacatttggagtttttctcattgagagataatagatggaatgaaattgaggttactaacttcccttatataaacttctctgattattccatggtag 49044094  T
Q  107 ggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaactgttaga 206  Q
    |||| ||||| |||||||| ||||| |||||  ||| || || ||||| | || || || |||||||||||||| ||||||| ||||||||||| |||||    
T  49044093 ggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttttaga 49043994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 7765701 - 7765761
Alignment:
Q  9 atcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcac 69  Q
    ||||||||||||||||||||| || ||||| ||||| |||| |||||| ||||||||||||    
T  7765701 atcacatttggagtttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7765761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 7801001 - 7801056
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| ||| |||||||||    
T  7801001 aaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgtt 7801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 49048252 - 49048197
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||||||||||||||||| || ||| |||||||||| |||||||||||| |||||    
T  49048252 aaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgtt 49048197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 7878045 - 7878083
Alignment:
Q  249 tggtttgtgggtatttggagaatttcttagtctatgggc 287  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcagtctatgggc 7878083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 48705275 - 48705193
Alignment:
Q  118 aatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaact 200  Q
    |||||||| |||||||||||  ||||||||| ||||| || |  | || |||||||||||||| |||||||||||||| ||||    
T  48705275 aatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaact 48705193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 50672862 - 50672908
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaag 360  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||    
T  50672862 aaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 50669301 - 50669416
Alignment:
Q  169 attgttgcctttaatttaatggaaaggaaactgttagagatac---ccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttg 265  Q
    |||||||||||| |||| |||||||||||||||||||| || |   |  |||| |||||||||  | || |  || || ||| |||||||||||||||||    
T  50669301 attgttgcctttgatttgatggaaaggaaactgttagacatgcctactcttccggatgattttatccatcaaacttcagattgtggtttgtgggtatttg 50669400  T
Q  266 gagaatttcttagtct 281  Q
    |||||||||| |||||    
T  50669401 gagaatttctcagtct 50669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 7786523 - 7786583
Alignment:
Q  9 atcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcac 69  Q
    ||||||||||||| ||||||| || ||||| ||||| |||| |||||| ||||||||||||    
T  7786523 atcacatttggaggttttctcgtttaaagacaatacttggaaagaaatcgagggtactcac 7786583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 48898959 - 48898999
Alignment:
Q  169 attgttgcctttaatttaatggaaaggaaactgttagagat 209  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  48898959 attgttgcctttgatttaacggaaaggaaactgttagagat 48898999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 48891495 - 48891546
Alignment:
Q  15 tttggagtttttctctttgaaagataatacatggagagaaattgagggtact 66  Q
    ||||||||||||||| |||| ||||||||  |||| ||||||||||||||||    
T  48891495 tttggagtttttctcattgagagataatatgtggaaagaaattgagggtact 48891546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 48861643 - 48861697
Alignment:
Q  305 atacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaa 359  Q
    ||||| || |||||||||| || |||||||||||| |||||| ||||||||||||    
T  48861643 atacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 428
Target Start/End: Original strand, 50669446 - 50669560
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatgccattcccaatttttaccctctatgttc 413  Q
    |||| |||||||||||||| | |||  ||||||| |||||||||||||||||| || | |  |||||||  | |||||| || |||| |||| |||| ||    
T  50669446 aaatgtgggtgatgaaagattccaagttgcattcatcttggactaagactcttattctacagattgatgcagtcattcctaaattttcccctatatgctc 50669545  T
Q  414 tacaaaaagtggtga 428  Q
    |||||| | ||||||    
T  50669546 tacaaagaatggtga 50669560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 7790140 - 7790197
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggta 64  Q
    ||||||||||||||| ||||||| || | ||||||||| |||| ||||||||| ||||    
T  7790140 tcatcacatttggaggttttctcatttagagataatacgtggaaagaaattgatggta 7790197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 7908398 - 7908451
Alignment:
Q  11 cacatttggagtttttctctttgaaagataatacatggagagaaattgagggta 64  Q
    |||||||| ||||||||||  | | |||||||||||||| ||||||||||||||    
T  7908398 cacatttgaagtttttctcagttagagataatacatggaaagaaattgagggta 7908451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 43596254 - 43596153
Alignment:
Q  182 atttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtct 281  Q
    ||||||| ||||| ||||| |||||||| |   |||| |||| |||| || ||||||||  | ||| || | ||||||||||||| ||||||||||||||    
T  43596254 atttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttcttagtct 43596155  T
Q  282 at 283  Q
    ||    
T  43596154 at 43596153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 45384891 - 45384830
Alignment:
Q  8 catcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactcac 69  Q
    ||||||| |||||||||||||| |||| || |||| |||||| ||||||| ||||| |||||    
T  45384891 catcacacttggagtttttctcgttgagagctaatgcatggaaagaaattcagggtgctcac 45384830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 48734174 - 48734215
Alignment:
Q  321 ggtgatgaaagaatacaaactgcattcgtcttggactaagac 362  Q
    ||||||||||||||||||| ||||||||| |||||| |||||    
T  48734174 ggtgatgaaagaatacaaagtgcattcgtattggacaaagac 48734215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 7237747 - 7237695
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattga 59  Q
    ||||||||||||||| |||||||||| | ||||||||  |||| |||||||||    
T  7237747 tcatcacatttggaggttttctcttttagagataatatgtggaaagaaattga 7237695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 7771455 - 7771507
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattga 59  Q
    ||||||||||||||| ||||||| || | ||||||||| |||| |||||||||    
T  7771455 tcatcacatttggaggttttctcatttagagataatacgtggaaagaaattga 7771507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 7877807 - 7877863
Alignment:
Q  11 cacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactc 67  Q
    |||||||| |||||||||| || | |||||||||||||| ||||| |||| ||||||    
T  7877807 cacatttgaagtttttctcatttagagataatacatggaaagaaactgagagtactc 7877863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 48705382 - 48705330
Alignment:
Q  8 catcacatttggagtttttctctttgaaagataatacatggagagaaattgag 60  Q
    ||||||| || ||||||||||| |||| || ||||||||||| ||||||||||    
T  48705382 catcacactttgagtttttctcattgagagttaatacatggaaagaaattgag 48705330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 48735098 - 48735058
Alignment:
Q  324 gatgaaagaatacaaactgcattcgtcttggactaagactc 364  Q
    |||||||||||||||| || |||||||||||||||| ||||    
T  48735098 gatgaaagaatacaaagtgaattcgtcttggactaaaactc 48735058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 167 - 368
Target Start/End: Original strand, 12200559 - 12200760
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    |||||||||||||| ||||||||||||||||| || |||||||||   |||||||||||||  || ||| || |   |||| ||||||||||||||||||    
T  12200559 ttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggtatttgg 12200658  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    |||||||||||||||||||   |||     | ||||||| || ||| ||||||||| |||||||  ||||||||||| |||||||||||| |||||||||    
T  12200659 agaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactctt 12200758  T
Q  367 gt 368  Q
    ||    
T  12200759 gt 12200760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 167 - 368
Target Start/End: Original strand, 12444987 - 12445188
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    |||||||||||||| ||||||||||||||||| || |||||||||   |||||||||||||  || ||| || |   |||| ||||||||||||||||||    
T  12444987 ttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggtatttgg 12445086  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    |||||||||||||||||||   |||     | ||||||| || ||| ||||||||| |||||||  ||||||||||| |||||||||||| |||||||||    
T  12445087 agaatttcttagtctatggaatatgaattttgataatcagacgcttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactctt 12445186  T
Q  367 gt 368  Q
    ||    
T  12445187 gt 12445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 368
Target Start/End: Original strand, 12195541 - 12195742
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||  ||||||||||||   || ||| |||     ||| ||||||||||||||||||    
T  12195541 ttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttgg 12195640  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    | ||||||| |||||||||   |||     | ||||||  ||| || ||||||||| |||||||||||||||||  || || ||||||||||||||||||    
T  12195641 aaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactctt 12195740  T
Q  367 gt 368  Q
    ||    
T  12195741 gt 12195742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 167 - 368
Target Start/End: Original strand, 12439969 - 12440170
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    ||||||||| |||| ||||||||||||||||| |||||||||||||  ||||||||||||   || ||| |||     ||| ||||||||||||||||||    
T  12439969 ttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggtatttgg 12440068  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    | ||||||| |||||||||   |||     | ||||||  ||| || ||||||||| |||||||||||||||||  || || ||||||||||||||||||    
T  12440069 aaaatttctcagtctatggaatatgaattttgataatcggacagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactctt 12440168  T
Q  367 gt 368  Q
    ||    
T  12440169 gt 12440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 167 - 366
Target Start/End: Complemental strand, 4962367 - 4962161
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcct--ccata--ttttggtttgtgggtat 262  Q
    ||||| ||| |||| ||||||||||||||||| |||||||||| ||  ||||  |||||||| || |||| |||  |  ||  || ||||||||||||||    
T  4962367 ttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgactatgaacctgtctgtaagttatggtttgtgggtat 4962268  T
Q  263 ttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcatt---cgtcttggactaa 359  Q
    ||||||||||||| |||||||||| |||||    |   |||  || | || |||||||||||||||||||||||||||||||||   |||| ||||||||    
T  4962267 ttggagaatttctcagtctatggggcatggattatcgcaattgtagagttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaa 4962168  T
Q  360 gactctt 366  Q
    |||||||    
T  4962167 gactctt 4962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 4031623 - 4031577
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaag 360  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  4031623 aaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 385
Target Start/End: Original strand, 15349100 - 15349318
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    |||||||||| ||| ||||||  |||||||||||||| ||||| ||   ||||||||||||| |  ||||| ||    ||| |||||||||||| |||||    
T  15349100 ttattgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttgg 15349199  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
     |||||| ||||||| ||| | | ||    |  |||| |||   || |||||||||||||||||||||||||| || | || |||||||| |||| ||||    
T  15349200 cgaattttttagtctttggtctacggattatcctaatgatagctttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattctt 15349299  T
Q  367 gttgttcgtattgatgatg 385  Q
    ||| ||  |||||||||||    
T  15349300 gttcttaatattgatgatg 15349318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 41311062 - 41311005
Alignment:
Q  306 tacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagact 363  Q
    ||||||||| |||||||||||| ||||||||  | | ||||| |||||||||||||||    
T  41311062 tacacttaagatatgggtgatgcaagaatacgcaatacattcatcttggactaagact 41311005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 167 - 368
Target Start/End: Complemental strand, 11005766 - 11005571
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttgg 266  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||| ||  ||||| ||| |||| |  |||| |||  | ||| || ||||||| |||||||    
T  11005766 ttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctatagattgtgatttgtggatatttgg 11005667  T
Q  267 agaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    ||||||||||||||||||||| |||||        || | ||| || |||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  11005666 agaatttcttagtctatgggctatggg------ggatgaaacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctctt 11005573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 382
Target Start/End: Complemental strand, 47451694 - 47451529
Alignment:
Q  217 ccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaa 316  Q
    |||||||||||| || |||| ||| |  ||| |||||||||||||||||||||||||||||||||| |||   |||   || ||||| ||| | || |||    
T  47451694 ccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaa 47451595  T
Q  317 tatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatg 382  Q
    ||||||||||||||||||||||| |  |||||||||||   |||||||||||| ||| ||||||||    
T  47451594 tatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatg 47451529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 368
Target Start/End: Complemental strand, 11024406 - 11024146
Alignment:
Q  102 agtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaactg 201  Q
    ||||||| ||||||| ||||||   |||||||||||  ||| |||   ||||| | || || || ||||| |||||||| ||||| |||||||| ||||     
T  11024406 agtagggacactctttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaactt 11024307  T
Q  202 ttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagttata 301  Q
    || ||||| ||  ||||||||| |||| |  |||| |||    ||| || ||||||| |||||||||||||||| ||||||||||| |||||  ||  ||    
T  11024306 ttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtg-ta 11024208  T
Q  302 atcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 368  Q
    |     || || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11024207 a-----caattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 368
Target Start/End: Complemental strand, 11015398 - 11015134
Alignment:
Q  98 ccaaagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaa 197  Q
    |||||||||||   ||||| |||||| | |||||||||||  ||| ||| | ||||| | || || || ||||||||| |||| ||||| ||||||||||    
T  11015398 ccaaagtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaa 11015299  T
Q  198 actgttagagatacccgttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgggcagt 297  Q
    ||| || ||||| |   ||||||||| |||| || |||| |||  | ||| || ||||||| |||||||||||||||| ||||||||||| ||||         
T  11015298 acttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatgg----- 11015204  T
Q  298 tataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 368  Q
     |  ||   ||| || |||||||||| ||||||||||||||| ||||||||||||||  ||| ||||||||    
T  11015203 -aggatggaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 11024522 - 11024469
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgag 60  Q
    |||||||||||| ||||||||||||||| || |||||||||||  |||||||||    
T  11024522 tcatcacatttgaagtttttctctttgagagctaatacatggaacgaaattgag 11024469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 316 - 432
Target Start/End: Complemental strand, 42562028 - 42561912
Alignment:
Q  316 atatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatgccattcccaatttttaccctctatgttcta 415  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| ||| |||| |||||| ||||||| | |||| |||| |||  | ||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttcttcctatttatgatgacattccctacttttgccctttatcctata 42561929  T
Q  416 caaaaagtggtgatatt 432  Q
    |||||| ||||||||||    
T  42561928 caaaaaatggtgatatt 42561912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 369
Target Start/End: Original strand, 9120067 - 9120182
Alignment:
Q  254 tgtgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttg 353  Q
    |||||||||||||||||||||| ||| ||||||| ||||    |  |||| ||||| || |||||||||||||||||||||||||| ||||||| |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  354 gactaagactcttgtt 369  Q
    ||  || |||||||||    
T  9120167 gaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 179364 - 179462
Alignment:
Q  256 tgggtatttggagaatttcttagtctatgggccatgggcagttataatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttgg 354  Q
    |||||||||||| ||||||| ||| ||||||| ||||    | ||||| ||||| || |||||||||||||||||||||||||| ||||||| ||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 179112 - 179168
Alignment:
Q  13 catttggagtttttctctttgaaagataatacatggagagaaattgagggtactcac 69  Q
    ||||||||| ||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  179112 catttggagattttctcattgagagataatacatggaaagaaattgagggtattcac 179168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 29688493 - 29688544
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactct 365  Q
    ||||||||||||||||| |||||||  |||| ||||||||||| ||||||||    
T  29688493 aaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactct 29688544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 29696600 - 29696654
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgt 368  Q
    |||||||||||||| || |||||||  |||| || ||||||||||||||||||||    
T  29696600 aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 21016185 - 21016237
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 366  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  21016185 aaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 361
Target Start/End: Complemental strand, 21979475 - 21979278
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagatacccgttccagat---gattttcacgatgatcctccatattttggtttgtgggtatt 263  Q
    |||||||||||||| ||||||| ||||||||||| || ||||| ||  ||||||||   ||||||||| || |   | || ||  |  ||||||||||||    
T  21979475 ttattgttgcctttgatttaatagaaaggaaactttttgagatccctcttccagatcatgattttcactatcagttttcacatcgtcatttgtgggtatt 21979376  T
Q  264 tggagaatttcttagtctatgggccatgggcagttat---aatcatacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaag 360  Q
    |||||| ||||||||||||| ||  |||   | ||||   |||||||||   ||||||||||||||||||||||||||| ||| ||| ||||||| ||||    
T  21979375 tggagattttcttagtctattgg--atgtcga-ttatggaaatcatacatcaaaaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataag 21979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 21979634 - 21979577
Alignment:
Q  11 cacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactca 68  Q
    ||||||||||| |||||||||||| ||||||||| |||| | ||||||||||| ||||    
T  21979634 cacatttggaggttttctctttgagagataatacctggaaacaaattgagggtgctca 21979577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  317 tatgggtgatgaaagaatacaaactgcattcgtcttggact 357  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 21015884 - 21015944
Alignment:
Q  7 tcatcacatttggagtttttctctttgaaagataatacatggagagaaattgagggtactc 67  Q
    |||||||| || ||||||||||| |||| ||||||||  |||| |||||||||||||||||    
T  21015884 tcatcacagttagagtttttctcgttgagagataataggtggaaagaaattgagggtactc 21015944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 24367520 - 24367584
Alignment:
Q  305 atacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    |||||||| | |||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||    
T  24367520 atacactttatatatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactcttgtt 24367584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 24310582 - 24310635
Alignment:
Q  316 atatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    |||||||||||||||||||||||| |||| || ||||||| ||| |||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 432
Target Start/End: Original strand, 24340780 - 24340893
Alignment:
Q  319 tgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatgccattcccaatttttaccctctatgttctacaa 418  Q
    ||||| ||||||||||| ||| |||| || ||||||||||| ||||||||| ||  || | ||||| ||||||  ||| ||| || | |||||| |||||    
T  24340780 tgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataatgtttcccttgtatgttgtacaa 24340879  T
Q  419 aaagtggtgatatt 432  Q
     |||||||||||||    
T  24340880 caagtggtgatatt 24340893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 432
Target Start/End: Original strand, 24353145 - 24353258
Alignment:
Q  319 tgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgttgttcgtattgatgatgccattcccaatttttaccctctatgttctacaa 418  Q
    ||||| ||||||||||| ||| |||| || ||||||||||| ||||||||| ||  || | ||||| ||||||  ||| ||| || | |||||| |||||    
T  24353145 tgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttcttactacttatgataccattcataatgtttcccttgtatgttgtacaa 24353244  T
Q  419 aaagtggtgatatt 432  Q
     |||||||||||||    
T  24353245 caagtggtgatatt 24353258  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 24416144 - 24416197
Alignment:
Q  316 atatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||||||||||||||||||||||  ||| || ||||||||||| |||||||||    
T  24416144 atatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgtt 24416197  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 24323139 - 24323189
Alignment:
Q  319 tgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    ||||||||||||||||||||| |||| || |||| |||||| |||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgtt 24323189  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 48884188 - 48884243
Alignment:
Q  314 aaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 369  Q
    |||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  48884188 aaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgtt 48884243  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 48884047 - 48884089
Alignment:
Q  167 ttattgttgcctttaatttaatggaaaggaaactgttagagat 209  Q
    |||||| ||||||| |||||||||||| |||||||||||||||    
T  48884047 ttattgctgcctttgatttaatggaaaagaaactgttagagat 48884089  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 30165853 - 30165914
Alignment:
Q  306 tacacttaaaatatgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttg 367  Q
    |||| |||| |||||||||||| ||||||||  | ||||||| |||||||||| ||||||||    
T  30165853 tacagttaagatatgggtgatgcaagaatacgcagtgcattcatcttggactacgactcttg 30165914  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 48883881 - 48883933
Alignment:
Q  9 atcacatttggagtttttctctttgaaagataatacatggagagaaattgagg 61  Q
    |||||||||||||| |||||| |||| ||||||||  |||| |||||||||||    
T  48883881 atcacatttggagtgtttctcattgagagataatatgtggaaagaaattgagg 48883933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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